Manganese in PDB 3bi3: X-Ray Structure of Alkb Protein Bound to Dsdna Containing 1MEA/A with Cofactors

The structure of X-Ray Structure of Alkb Protein Bound to Dsdna Containing 1MEA/A with Cofactors, PDB code: 3bi3 was solved by C.Yi, C.-G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.407, 75.629, 50.972, 90.00, 107.73, 90.00
R / Rfree (%)	21.5 / 24.7

The binding sites of Manganese atom in the X-Ray Structure of Alkb Protein Bound to Dsdna Containing 1MEA/A with Cofactors (pdb code 3bi3). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the X-Ray Structure of Alkb Protein Bound to Dsdna Containing 1MEA/A with Cofactors, PDB code: 3bi3:

Manganese binding site 1 out of 1 in the X-Ray Structure of Alkb Protein Bound to Dsdna Containing 1MEA/A with Cofactors


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of Alkb Protein Bound to Dsdna Containing 1MEA/A with Cofactors within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:25.5 occ:1.00 NE2 A:HIS187 2.1 26.6 1.0 O2 A:AKG302 2.2 23.5 1.0 NE2 A:HIS131 2.2 28.9 1.0 OD1 A:ASP133 2.2 32.9 1.0 O A:HOH427 2.5 26.5 1.0 O5 A:AKG302 2.5 22.3 1.0 C1 A:AKG302 3.0 23.7 1.0 CE1 A:HIS187 3.1 27.0 1.0 CG A:ASP133 3.1 32.9 1.0 CD2 A:HIS131 3.1 29.2 1.0 C2 A:AKG302 3.1 22.5 1.0 CE1 A:HIS131 3.1 28.9 1.0 CD2 A:HIS187 3.1 26.5 1.0 OD2 A:ASP133 3.3 32.5 1.0 NH2 A:ARG210 4.1 38.9 1.0 ND1 A:HIS187 4.2 27.6 1.0 O1 A:AKG302 4.2 24.1 1.0 ND1 A:HIS131 4.2 28.9 1.0 CG A:HIS131 4.2 29.8 1.0 CG A:HIS187 4.2 27.2 1.0 O A:HOH439 4.4 28.3 1.0 N1 B:MA78 4.4 19.7 1.0 CB A:ASP133 4.4 33.0 1.0 CN B:MA78 4.5 20.6 1.0 C2 B:MA78 4.6 19.9 1.0 C3 A:AKG302 4.6 21.9 1.0 CZ2 A:TRP178 4.8 29.2 1.0 C6 B:MA78 4.8 19.8 1.0 N A:ASP133 4.8 32.6 1.0 CA A:ASP133 5.0 33.3 1.0

C.G.Yang, C.Yi, E.M.Duguid, C.T.Sullivan, X.Jian, P.A.Rice, C.He. Crystal Structures of Dna/Rna Repair Enzymes Alkb and ABH2 Bound to Dsdna. Nature V. 452 961 2008.
ISSN: ISSN 0028-0836
PubMed: 18432238
DOI: 10.1038/NATURE06889