Manganese in PDB 3bfr: The Crystal Structure of SOD2 From Saccharomyces Cerevisiae

All present enzymatic activity of The Crystal Structure of SOD2 From Saccharomyces Cerevisiae:
1.15.1.1;

The structure of The Crystal Structure of SOD2 From Saccharomyces Cerevisiae, PDB code: 3bfr was solved by Y.-X.He, M.-X.Zhao, C.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.05
Space group	P 2 3
Cell size a, b, c (Å), α, β, γ (°)	92.740, 92.740, 92.740, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.4

The binding sites of Manganese atom in the The Crystal Structure of SOD2 From Saccharomyces Cerevisiae (pdb code 3bfr). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Crystal Structure of SOD2 From Saccharomyces Cerevisiae, PDB code: 3bfr:

Manganese binding site 1 out of 1 in the The Crystal Structure of SOD2 From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of SOD2 From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn216 b:13.0 occ:1.00 OD1 A:ASP176 2.0 12.4 1.0 NE2 A:HIS89 2.1 13.4 1.0 O A:HOH270 2.2 12.6 1.0 NE2 A:HIS180 2.2 10.8 1.0 NE2 A:HIS34 2.3 10.8 1.0 CG A:ASP176 3.1 11.6 1.0 CE1 A:HIS89 3.1 12.5 1.0 CD2 A:HIS89 3.1 12.1 1.0 CD2 A:HIS34 3.2 11.2 1.0 CE1 A:HIS180 3.2 10.3 1.0 CD2 A:HIS180 3.2 11.1 1.0 CE1 A:HIS34 3.3 11.5 1.0 OD2 A:ASP176 3.5 10.9 1.0 ND1 A:HIS89 4.2 11.9 1.0 CG A:HIS89 4.3 12.3 1.0 ND1 A:HIS180 4.3 10.9 1.0 CZ2 A:TRP141 4.3 10.7 1.0 CB A:ASP176 4.3 11.0 1.0 CG A:HIS34 4.3 12.2 1.0 CG A:HIS180 4.3 10.9 1.0 ND1 A:HIS34 4.4 11.2 1.0 CB A:TRP178 4.4 10.2 1.0 CG A:TRP178 4.6 9.8 1.0 CH2 A:TRP141 4.6 10.3 1.0 NE2 A:GLN162 4.7 12.6 1.0 CD1 A:TRP178 4.9 9.6 1.0

Y.Kang, Y.-X.He, M.-X.Zhao, W.-F.Li. Structures of Native and Fe-Substituted SOD2 From Saccharomyces Cerevisiae Acta Crystallogr.,Sect.F V. 67 1173 2011.
ISSN: ESSN 1744-3091
PubMed: 22102021
DOI: 10.1107/S1744309111029186