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Manganese in PDB 3azg: Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Protein crystallography data
The structure of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation, PDB code: 3azg
was solved by
W.Iwasaki,
H.Tachiwana,
K.Kawaguchi,
T.Shibata,
W.Kagawa,
H.Kurumizaka,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 39.16 / 2.40 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 106.527, 109.772, 182.365, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 22.6 / 26.9 |
Other elements in 3azg:
The structure of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation also contains other interesting chemical elements:
| Chlorine | (Cl) | 4 atoms |
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
(pdb code 3azg). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 9 binding sites of Manganese where determined in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation, PDB code: 3azg:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;
In total 9 binding sites of Manganese where determined in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation, PDB code: 3azg:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;
Manganese binding site 1 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 1 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 2 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 2 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 3 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 3 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 4 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 4 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 5 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 5 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 6 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 6 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 7 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 7 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 8 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 8 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Manganese binding site 9 out of 9 in 3azg
Go back to
Manganese Binding Sites List in 3azg
Manganese binding site 9 out
of 9 in the Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q Mutation within 5.0Å range:
|
Reference:
W.Iwasaki,
H.Tachiwana,
K.Kawaguchi,
T.Shibata,
W.Kagawa,
H.Kurumizaka.
Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (Kq) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry V. 50 7822 2011.
ISSN: ISSN 0006-2960
PubMed: 21812398
DOI: 10.1021/BI201021H
Page generated: Sat Oct 5 15:49:16 2024
ISSN: ISSN 0006-2960
PubMed: 21812398
DOI: 10.1021/BI201021H
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