Manganese in PDB 3a6u: Crystal Structure of Mutt-8-Oxo-Dgmp-Mn(II) Complex

The structure of Crystal Structure of Mutt-8-Oxo-Dgmp-Mn(II) Complex, PDB code: 3a6u was solved by T.Nakamura, Y.Yamagata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.20 / 2.56
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.234, 56.003, 59.339, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.2

The binding sites of Manganese atom in the Crystal Structure of Mutt-8-Oxo-Dgmp-Mn(II) Complex (pdb code 3a6u). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Mutt-8-Oxo-Dgmp-Mn(II) Complex, PDB code: 3a6u:

Manganese binding site 1 out of 1 in the Crystal Structure of Mutt-8-Oxo-Dgmp-Mn(II) Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mutt-8-Oxo-Dgmp-Mn(II) Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1001 b:23.1 occ:0.70 O A:HOH218 2.1 22.5 1.0 O A:HOH205 2.1 13.3 1.0 O A:HOH217 2.2 23.2 1.0 O A:GLY37 2.2 15.4 1.0 OP1 A:8OG5001 2.2 23.2 1.0 OE1 A:GLU57 2.3 17.8 1.0 CD A:GLU57 3.3 16.6 1.0 C A:GLY37 3.4 15.5 1.0 P A:8OG5001 3.6 21.6 1.0 OE2 A:GLU57 3.7 18.6 1.0 N2 A:8OG5001 4.0 6.0 1.0 OP3 A:8OG5001 4.1 23.4 1.0 CA A:GLY38 4.1 17.9 1.0 O A:HOH165 4.1 12.4 1.0 N A:GLY38 4.2 16.2 1.0 N A:GLY37 4.2 16.3 1.0 OP2 A:8OG5001 4.4 22.8 1.0 CA A:GLY37 4.4 16.1 1.0 NH1 A:ARG23 4.5 6.8 1.0 OE2 A:GLU34 4.6 12.1 1.0 CG A:GLU57 4.6 18.3 1.0 O A:HOH180 4.6 27.8 1.0 OE2 A:GLU53 4.7 21.5 1.0 O A:HOH139 4.7 26.2 1.0 O5' A:8OG5001 4.7 23.4 1.0 OE1 A:GLU34 4.9 16.8 1.0 C5' A:8OG5001 5.0 17.9 1.0

T.Nakamura, S.Meshitsuka, S.Kitagawa, N.Abe, J.Yamada, T.Ishino, H.Nakano, T.Tsuzuki, T.Doi, Y.Kobayashi, S.Fujii, M.Sekiguchi, Y.Yamagata. Structural and Dynamic Features of the Mutt Protein in the Recognition of Nucleotides with the Mutagenic 8-Oxoguanine Base J.Biol.Chem. V. 285 444 2010.
ISSN: ISSN 0021-9258
PubMed: 19864691
DOI: 10.1074/JBC.M109.066373