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Manganese in PDB 2zti: Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes

Enzymatic activity of Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes

All present enzymatic activity of Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes:
3.6.1.19;

Protein crystallography data

The structure of Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes, PDB code: 2zti was solved by N.K.Lokanath, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.282, 76.282, 82.585, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 21.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes (pdb code 2zti). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes, PDB code: 2zti:

Manganese binding site 1 out of 1 in 2zti

Go back to Manganese Binding Sites List in 2zti
Manganese binding site 1 out of 1 in the Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn187

b:48.9
occ:1.00
 OE1 A:GLU36 2.0 45.1 1.0
O A:HOH189 2.1 49.4 1.0
O A:HOH259 2.2 50.3 1.0
OD1 A:ASP65 2.3 35.2 1.0
O A:HOH243 2.4 32.6 1.0
O A:HOH260 2.5 42.4 1.0
CD A:GLU36 3.0 45.3 1.0
CG A:ASP65 3.4 37.2 1.0
OE2 A:GLU36 3.5 49.0 1.0
O A:HOH188 3.8 50.2 1.0
OD2 A:ASP65 3.9 40.5 1.0
O A:HOH246 3.9 34.1 1.0
CG A:GLU36 4.2 42.7 1.0
O A:VAL79 4.3 38.9 1.0
CB A:ASP65 4.6 35.4 1.0
CB A:GLU36 4.6 39.3 1.0
O A:HOH193 4.7 53.4 1.0
CG1 A:VAL45 4.9 33.6 1.0
OG A:SER82 4.9 47.8 1.0
CA A:ASP65 4.9 35.1 1.0

Reference:

N.K.Lokanath, K.J.Pampa, K.Takio, N.Kunishima. Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase From Pyrococcus Horikoshii OT3: Functional Significance of Interprotomer Conformational Changes J.Mol.Biol. V. 375 1013 2008.
ISSN: ISSN 0022-2836
PubMed: 18062990
DOI: 10.1016/J.JMB.2007.11.018
Page generated: Tue Dec 15 04:07:13 2020

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