Manganese in PDB 2yz4: The Neutron Structure of Concanavalin A at 2.2 Angstroms

The structure of The Neutron Structure of Concanavalin A at 2.2 Angstroms also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Manganese atom in the The Neutron Structure of Concanavalin A at 2.2 Angstroms (pdb code 2yz4). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Neutron Structure of Concanavalin A at 2.2 Angstroms, PDB code: 2yz4:

Manganese binding site 1 out of 1 in the The Neutron Structure of Concanavalin A at 2.2 Angstroms


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Neutron Structure of Concanavalin A at 2.2 Angstroms within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn500 b:1.0 occ:1.00 OD2 A:ASP10 2.2 19.8 1.0 OE2 A:GLU8 2.2 16.0 1.0 OD1 A:ASP19 2.2 7.3 1.0 NE2 A:HIS24 2.2 12.6 1.0 O A:DOD506 2.3 16.8 1.0 D2 A:DOD520 2.5 31.4 1.0 D2 A:DOD506 2.5 15.5 1.0 O A:DOD520 2.9 31.4 1.0 CG A:ASP19 3.1 13.8 1.0 CG A:ASP10 3.2 22.4 1.0 CD A:GLU8 3.2 16.0 1.0 CE1 A:HIS24 3.2 14.6 1.0 D1 A:DOD506 3.2 14.8 1.0 CD2 A:HIS24 3.3 14.0 1.0 DG A:SER34 3.4 23.2 1.0 HB2 A:ASP10 3.4 23.6 1.0 HE1 A:HIS24 3.4 14.1 1.0 HD2 A:HIS24 3.5 16.6 1.0 HB3 A:ASP10 3.6 23.7 1.0 OE1 A:GLU8 3.6 12.3 1.0 OD2 A:ASP19 3.6 14.5 1.0 CB A:ASP10 3.6 23.1 1.0 D1 A:DOD520 3.7 30.6 1.0 D1 A:DOD504 3.8 14.5 1.0 O A:DOD504 3.8 15.1 1.0 O A:DOD503 3.9 32.5 1.0 HA A:ASP19 3.9 18.7 1.0 D1 A:DOD503 4.1 31.4 1.0 OG A:SER34 4.1 22.7 1.0 CA A:CA501 4.2 21.7 1.0 CB A:ASP19 4.2 16.7 1.0 OD1 A:ASP10 4.3 20.6 1.0 HD2 A:PRO20 4.3 22.1 1.0 D2 A:DOD503 4.4 32.4 1.0 ND1 A:HIS24 4.4 17.1 1.0 HB3 A:ASP19 4.4 17.4 1.0 CG A:HIS24 4.5 14.9 1.0 CG A:GLU8 4.5 19.1 1.0 HG3 A:GLU8 4.6 18.6 1.0 CA A:ASP19 4.6 19.4 1.0 HG23 A:THR37 4.6 21.3 1.0 D2 A:DOD504 4.6 12.8 1.0 O A:VAL32 4.6 16.0 1.0 D A:SER34 4.8 20.7 1.0

H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.Cruickshank, J.A.Hubbard, J.R.Helliwell. The Determination of Protonation States in Proteins. Acta Crystallogr.,Sect.D V. 63 906 2007.
ISSN: ISSN 0907-4449
PubMed: 17642517
DOI: 10.1107/S0907444907029976