Manganese in PDB 2wjf: Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.
Enzymatic activity of Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.
All present enzymatic activity of Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.:
3.1.3.48;
Protein crystallography data
The structure of Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate., PDB code: 2wjf
was solved by
G.Hagelueken,
H.Huang,
J.H.Naismith,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.86 /
2.22
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.980,
58.700,
115.200,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.8 /
22.4
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.
(pdb code 2wjf). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the
Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate., PDB code: 2wjf:
Jump to Manganese binding site number:
1;
2;
3;
Manganese binding site 1 out
of 3 in 2wjf
Go back to
Manganese Binding Sites List in 2wjf
Manganese binding site 1 out
of 3 in the Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1245
b:34.4
occ:1.00
|
OE1
|
A:GLU80
|
2.2
|
13.1
|
1.0
|
NE2
|
A:HIS136
|
2.3
|
18.1
|
1.0
|
OE2
|
A:GLU108
|
2.4
|
22.8
|
1.0
|
O2
|
A:PO41244
|
2.4
|
29.2
|
1.0
|
O1
|
A:PO41244
|
2.6
|
21.2
|
1.0
|
CD
|
A:GLU108
|
2.9
|
22.8
|
1.0
|
P
|
A:PO41244
|
3.0
|
32.0
|
1.0
|
CD
|
A:GLU80
|
3.1
|
13.9
|
1.0
|
CD2
|
A:HIS136
|
3.3
|
18.6
|
1.0
|
CE1
|
A:HIS136
|
3.3
|
19.7
|
1.0
|
OE1
|
A:GLU108
|
3.3
|
20.4
|
1.0
|
OE2
|
A:GLU80
|
3.4
|
11.6
|
1.0
|
MN
|
A:MN1246
|
3.6
|
10.0
|
1.0
|
O3
|
A:PO41244
|
3.8
|
36.3
|
1.0
|
NH2
|
A:ARG139
|
3.9
|
19.2
|
1.0
|
CB
|
A:GLU108
|
3.9
|
15.0
|
1.0
|
CE1
|
A:HIS42
|
4.0
|
13.9
|
1.0
|
CG
|
A:GLU108
|
4.0
|
17.1
|
1.0
|
CE1
|
A:HIS5
|
4.3
|
12.5
|
1.0
|
O4
|
A:PO41244
|
4.3
|
31.5
|
1.0
|
CG
|
A:GLU80
|
4.3
|
6.9
|
1.0
|
ND1
|
A:HIS136
|
4.4
|
20.5
|
1.0
|
NE2
|
A:HIS5
|
4.4
|
10.6
|
1.0
|
CG
|
A:HIS136
|
4.4
|
18.6
|
1.0
|
CZ
|
A:ARG139
|
4.5
|
26.3
|
1.0
|
O
|
A:HOH2167
|
4.6
|
25.1
|
1.0
|
OD2
|
A:ASP199
|
4.6
|
18.8
|
1.0
|
O
|
A:HOH2290
|
4.7
|
41.1
|
1.0
|
NH1
|
A:ARG139
|
4.7
|
27.3
|
1.0
|
CB
|
A:ALA135
|
4.7
|
10.3
|
1.0
|
ND1
|
A:HIS42
|
4.8
|
13.1
|
1.0
|
NE2
|
A:HIS42
|
4.9
|
12.2
|
1.0
|
O
|
A:HOH2073
|
4.9
|
10.8
|
1.0
|
|
Manganese binding site 2 out
of 3 in 2wjf
Go back to
Manganese Binding Sites List in 2wjf
Manganese binding site 2 out
of 3 in the Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1246
b:10.0
occ:1.00
|
O1
|
A:PO41244
|
2.0
|
21.2
|
1.0
|
OE2
|
A:GLU80
|
2.1
|
11.6
|
1.0
|
NE2
|
A:HIS7
|
2.1
|
10.5
|
1.0
|
NE2
|
A:HIS5
|
2.2
|
10.6
|
1.0
|
OD1
|
A:ASP199
|
2.4
|
14.9
|
1.0
|
CD
|
A:GLU80
|
2.9
|
13.9
|
1.0
|
CE1
|
A:HIS7
|
3.1
|
10.8
|
1.0
|
CE1
|
A:HIS5
|
3.1
|
12.5
|
1.0
|
CD2
|
A:HIS7
|
3.2
|
15.0
|
1.0
|
CD2
|
A:HIS5
|
3.2
|
12.6
|
1.0
|
OE1
|
A:GLU80
|
3.2
|
13.1
|
1.0
|
CG
|
A:ASP199
|
3.3
|
14.0
|
1.0
|
P
|
A:PO41244
|
3.5
|
32.0
|
1.0
|
MN
|
A:MN1245
|
3.6
|
34.4
|
1.0
|
OD2
|
A:ASP199
|
3.6
|
18.8
|
1.0
|
CE1
|
A:HIS42
|
3.9
|
13.9
|
1.0
|
CE1
|
A:HIS201
|
4.1
|
14.6
|
1.0
|
O3
|
A:PO41244
|
4.1
|
36.3
|
1.0
|
NE2
|
A:HIS42
|
4.1
|
12.2
|
1.0
|
ND1
|
A:HIS7
|
4.2
|
15.9
|
1.0
|
O4
|
A:PO41244
|
4.2
|
31.5
|
1.0
|
ND1
|
A:HIS5
|
4.3
|
14.5
|
1.0
|
NE2
|
A:HIS201
|
4.3
|
15.4
|
1.0
|
CG
|
A:GLU80
|
4.3
|
6.9
|
1.0
|
CG
|
A:HIS7
|
4.3
|
11.8
|
1.0
|
CG
|
A:HIS5
|
4.3
|
14.7
|
1.0
|
O2
|
A:PO41244
|
4.4
|
29.2
|
1.0
|
CB
|
A:ASP199
|
4.5
|
12.3
|
1.0
|
MN
|
A:MN1247
|
4.5
|
16.6
|
1.0
|
CB
|
A:GLU80
|
4.6
|
7.0
|
1.0
|
ND1
|
A:HIS42
|
4.7
|
13.1
|
1.0
|
CA
|
A:ASP199
|
4.8
|
10.5
|
1.0
|
O
|
A:THR40
|
4.9
|
13.3
|
1.0
|
|
Manganese binding site 3 out
of 3 in 2wjf
Go back to
Manganese Binding Sites List in 2wjf
Manganese binding site 3 out
of 3 in the Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate.
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of the Tyrosine Phosphatase CPS4B From Steptococcus Pneumoniae TIGR4 in Complex with Phosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1247
b:16.6
occ:1.00
|
NE2
|
A:HIS42
|
2.2
|
12.2
|
1.0
|
NE2
|
A:HIS201
|
2.2
|
15.4
|
1.0
|
O4
|
A:PO41244
|
2.3
|
31.5
|
1.0
|
OD1
|
A:ASP14
|
2.4
|
24.0
|
1.0
|
OD2
|
A:ASP14
|
2.5
|
22.7
|
1.0
|
CG
|
A:ASP14
|
2.8
|
18.1
|
1.0
|
CD2
|
A:HIS42
|
2.9
|
11.5
|
1.0
|
CD2
|
A:HIS201
|
3.0
|
7.8
|
1.0
|
CE1
|
A:HIS42
|
3.3
|
13.9
|
1.0
|
CE1
|
A:HIS201
|
3.3
|
14.6
|
1.0
|
P
|
A:PO41244
|
3.5
|
32.0
|
1.0
|
O1
|
A:PO41244
|
3.6
|
21.2
|
1.0
|
NH2
|
A:ARG206
|
3.7
|
40.6
|
1.0
|
CE1
|
A:HIS7
|
3.8
|
10.8
|
1.0
|
NE2
|
A:HIS7
|
3.9
|
10.5
|
1.0
|
O
|
A:HOH2290
|
4.1
|
41.1
|
1.0
|
CG
|
A:HIS42
|
4.2
|
9.8
|
1.0
|
CG
|
A:HIS201
|
4.2
|
10.0
|
1.0
|
ND1
|
A:HIS7
|
4.2
|
15.9
|
1.0
|
NH1
|
A:ARG206
|
4.2
|
41.5
|
1.0
|
CB
|
A:ASP14
|
4.3
|
13.6
|
1.0
|
CZ
|
A:ARG206
|
4.3
|
41.8
|
1.0
|
CD2
|
A:HIS7
|
4.3
|
15.0
|
1.0
|
ND1
|
A:HIS42
|
4.3
|
13.1
|
1.0
|
ND1
|
A:HIS201
|
4.3
|
18.4
|
1.0
|
O2
|
A:PO41244
|
4.4
|
29.2
|
1.0
|
CG
|
A:HIS7
|
4.5
|
11.8
|
1.0
|
O3
|
A:PO41244
|
4.5
|
36.3
|
1.0
|
MN
|
A:MN1246
|
4.5
|
10.0
|
1.0
|
CZ
|
A:PHE48
|
4.8
|
16.2
|
1.0
|
CE1
|
A:PHE48
|
4.9
|
15.4
|
1.0
|
|
Reference:
G.Hagelueken,
H.Huang,
I.L.Mainprize,
C.Whitfield,
J.H.Naismith.
Crystal Structures of Wzb of Escherichia Coli and Cpsb of Streptococcus Pneumoniae, Representatives of Two Families of Tyrosine Phosphatases That Regulate Capsule Assembly. J.Mol.Biol. V. 392 678 2009.
ISSN: ISSN 0022-2836
PubMed: 19616007
DOI: 10.1016/J.JMB.2009.07.026
Page generated: Sat Oct 5 15:23:52 2024
|