Chemical elements
  Manganese
    Isotopes
    Energy
    Production
    Application
    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
      2vs3
      2vs4
      2vs5
      2vs8
      2vxl
      2w1a
      2w2h
      2w42
      2w5q
      2w5r
      2w5s
      2w5t
      2w69
      2wc9
      2wcx
      2wdc
      2wdd
      2wde
      2wdf
      2wgz
      2who
      2whx
      2wjd
      2wje
      2wjf
      2woc
      2wod
      2woe
      2wqp
      2wym
      2wzf
      2x6n
      2x7j
      2xcs
      2xct
      2xdv
      2xi5
      2xi7
      2xkq
      2xmo
      2xw4
      2xwy
      2y40
      2y41
      2y42
      2y4l
      2yz4
      2z7b
      2z86
      2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Crystal Structure of Hepatitis C Virus NS5B Polymerase From 1B Genotype in Complex With A Non-Nucleoside Inhibitor (pdb 2who)






The binding sites of Manganese atom in the structure of Crystal Structure of Hepatitis C Virus NS5B Polymerase From 1B Genotype in Complex With A Non-Nucleoside Inhibitor (pdb code 2who). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 2who structure was solved by S.DI MARCO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)95.3-2.0
Space groupP212121
a (A)67.210
b (A)96.999
c (A)193.762
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)21.055
Rfree (%)26.579


Manganese Binding Sites:

Manganese binding site 1 out of 4 in 2who


Manganese binding site 1 out of 4 in 2who
Click to enlarge
stereopicture of Manganese binding site 1 out of 4 in 2who
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 2who. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp220, A: Asp318, A: Asp319, A: Mn1533, A: Hoh2164, A: Hoh2165, A: Hoh2166, A: Hoh2254, A: Hoh2255, A: Hoh2256, A: Hoh2258,

conact list:


AtomAtomDistance (A)
MnCB A:Asp2204.58
MnOD2 A:Asp2202.14
MnOD1 A:Asp2203.61
MnCG A:Asp2203.24
MnO A:Asp3184.65
MnN A:Asp3184.72
MnCB A:Asp3184.50
MnOD2 A:Asp3182.15
MnC A:Asp3184.32
MnOD1 A:Asp3183.38
MnCG A:Asp3183.13
MnCA A:Asp3184.77
MnN A:Asp3194.17
MnCB A:Asp3194.27
MnOD2 A:Asp3193.43
MnOD1 A:Asp3192.03
MnCG A:Asp3193.06
MnCA A:Asp3194.46
MnMN A:Mn15333.65
MnO A:Hoh21644.36
MnO A:Hoh21654.24
MnO A:Hoh21664.13
MnO A:Hoh22542.62
MnO A:Hoh22552.25
MnO A:Hoh22562.43
MnO A:Hoh22584.68

interactive model:


Manganese binding site 2 out of 4 in 2who


Manganese binding site 2 out of 4 in 2who
Click to enlarge
stereopicture of Manganese binding site 2 out of 4 in 2who
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 2who. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp220, A: Thr221, A: Arg222, A: Cys223, A: Phe224, A: Asp318, A: Mn1532, A: Hoh2115, A: Hoh2119, A: Hoh2254, A: Hoh2255, A: Hoh2256, A: Hoh2257, A: Hoh2258,

conact list:


AtomAtomDistance (A)
MnO A:Asp2204.93
MnCB A:Asp2204.36
MnOD2 A:Asp2203.39
MnC A:Asp2204.24
MnOD1 A:Asp2202.08
MnCG A:Asp2203.09
MnCA A:Asp2204.69
MnO A:Thr2212.29
MnN A:Thr2213.59
MnCB A:Thr2214.49
MnC A:Thr2213.40
MnCA A:Thr2214.01
MnN A:Arg2224.49
MnC A:Arg2224.94
MnCA A:Arg2224.84
MnN A:Cys2234.62
MnN A:Phe2244.41
MnCB A:Phe2244.40
MnCB A:Asp3184.51
MnOD2 A:Asp3183.57
MnOD1 A:Asp3182.10
MnCG A:Asp3183.20
MnMN A:Mn15323.65
MnO A:Hoh21154.02
MnO A:Hoh21194.62
MnO A:Hoh22542.68
MnO A:Hoh22554.95
MnO A:Hoh22564.85
MnO A:Hoh22572.34
MnO A:Hoh22582.33

interactive model:


Manganese binding site 3 out of 4 in 2who


Manganese binding site 3 out of 4 in 2who
Click to enlarge
stereopicture of Manganese binding site 3 out of 4 in 2who
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 2who. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp220, B: Asp318, B: Asp319, B: Mn1533, B: Hoh2161, B: Hoh2257, B: Hoh2258,

conact list:


AtomAtomDistance (A)
MnCB B:Asp2204.50
MnOD2 B:Asp2203.57
MnOD1 B:Asp2202.15
MnCG B:Asp2203.22
MnO B:Asp3184.52
MnN B:Asp3184.68
MnCB B:Asp3184.42
MnOD2 B:Asp3182.03
MnC B:Asp3184.22
MnOD1 B:Asp3183.46
MnCG B:Asp3183.09
MnCA B:Asp3184.67
MnN B:Asp3194.13
MnCB B:Asp3194.33
MnOD2 B:Asp3193.49
MnOD1 B:Asp3192.08
MnCG B:Asp3193.12
MnCA B:Asp3194.49
MnMN B:Mn15333.62
MnO B:Hoh21614.52
MnO B:Hoh22572.87
MnO B:Hoh22584.77

interactive model:


Manganese binding site 4 out of 4 in 2who


Manganese binding site 4 out of 4 in 2who
Click to enlarge
stereopicture of Manganese binding site 4 out of 4 in 2who
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 2who. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp220, B: Thr221, B: Arg222, B: Cys223, B: Phe224, B: Asp318, B: Mn1532, B: Hoh2113, B: Hoh2117, B: Hoh2257, B: Hoh2258, B: Hoh2259,

conact list:


AtomAtomDistance (A)
MnO B:Asp2204.96
MnCB B:Asp2204.37
MnOD2 B:Asp2202.11
MnC B:Asp2204.25
MnOD1 B:Asp2203.41
MnCG B:Asp2203.10
MnCA B:Asp2204.69
MnO B:Thr2212.19
MnN B:Thr2213.54
MnCB B:Thr2214.46
MnC B:Thr2213.30
MnCA B:Thr2213.91
MnN B:Arg2224.40
MnC B:Arg2224.88
MnCA B:Arg2224.75
MnN B:Cys2234.59
MnN B:Phe2244.36
MnCB B:Phe2244.41
MnCA B:Phe2244.99
MnCB B:Asp3184.47
MnOD2 B:Asp3183.44
MnOD1 B:Asp3182.09
MnCG B:Asp3183.14
MnMN B:Mn15323.62
MnO B:Hoh21134.15
MnO B:Hoh21174.63
MnO B:Hoh22573.01
MnO B:Hoh22582.28
MnO B:Hoh22592.52

interactive model:




© Copyright 2008-2012 by atomistry.com