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Manganese in PDB 2vxl: Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase

Enzymatic activity of Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase

All present enzymatic activity of Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase:
2.4.1.87;

Protein crystallography data

The structure of Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase, PDB code: 2vxl was solved by P.Tumbale, H.Jamaluddin, N.Thiyagarajan, K.R.Acharya, K.Brew, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.91 / 2.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.197, 70.197, 126.991, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 26

Manganese Binding Sites:

The binding sites of Manganese atom in the Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase (pdb code 2vxl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase, PDB code: 2vxl:

Manganese binding site 1 out of 1 in 2vxl

Go back to Manganese Binding Sites List in 2vxl
Manganese binding site 1 out of 1 in the Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Screening A Limited Structure-Based Library Identifies Udp- Galnac-Specific Mutants of Alpha-1,3 Galactosyltransferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn400

b:23.4
occ:1.00
 OD2 A:ASP225 2.1 21.4 1.0
O2B A:UDP401 2.2 23.0 1.0
O1A A:UDP401 2.3 21.6 1.0
OD1 A:ASP227 2.4 19.7 1.0
OD2 A:ASP227 2.4 17.5 1.0
CG A:ASP227 2.7 19.5 1.0
CG A:ASP225 3.1 19.7 1.0
PB A:UDP401 3.3 21.2 1.0
O3A A:UDP401 3.4 21.9 1.0
CB A:ASP225 3.4 18.8 1.0
PA A:UDP401 3.4 22.0 1.0
O3' A:UDP401 3.8 23.6 1.0
O1B A:UDP401 4.2 21.3 1.0
OD1 A:ASP225 4.2 19.8 1.0
CB A:ASP227 4.2 20.1 1.0
O3B A:UDP401 4.4 21.1 1.0
C5' A:UDP401 4.4 23.4 1.0
O5' A:UDP401 4.5 23.2 1.0
O2A A:UDP401 4.5 22.6 1.0
C3' A:UDP401 4.6 23.4 1.0
OE1 A:GLN228 4.8 21.7 1.0
CA A:ASP225 4.8 18.9 1.0
O A:ASP227 4.9 20.4 1.0

Reference:

P.Tumbale, H.Jamaluddin, N.Thiyagarajan, K.R.Acharya, K.Brew. Screening A Limited Structure-Based Library Identifies Udp-Galnac-Specific Mutants of {Alpha}- 1,3-Galactosyltransferase. Glycobiology V. 18 1036 2008.
ISSN: ISSN 0959-6658
PubMed: 18782853
DOI: 10.1093/GLYCOB/CWN083
Page generated: Sat Oct 5 15:20:00 2024

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