Manganese in PDB 2v8u: Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
Enzymatic activity of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
All present enzymatic activity of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus:
1.11.1.6;
Protein crystallography data
The structure of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus, PDB code: 2v8u
was solved by
V.V.Barynin,
S.V.Antonyuk,
A.A.Vaguine,
W.R.Melik-Adamyan,
A.N.Popov,
V.S.Lamsin,
P.M.Harrison,
P.J.Artymiuk,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
95.35 /
1.05
|
|
Space group
|
P 21 3
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.300,
132.300,
132.300,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
10.6 /
12.1
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
(pdb code 2v8u). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus, PDB code: 2v8u:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 1 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1303
b:7.9
occ:0.50
|
MN
|
A:MN1303
|
0.0
|
7.9
|
0.5
|
|
MN
|
A:MN1303
|
0.0
|
7.9
|
0.5
|
|
O
|
A:O1307
|
1.9
|
8.6
|
0.2
|
|
O
|
A:O1305
|
2.0
|
10.4
|
0.8
|
|
O
|
A:O1306
|
2.1
|
9.5
|
0.8
|
|
OE2
|
A:GLU36
|
2.1
|
10.7
|
0.5
|
|
OE1
|
A:GLU36
|
2.1
|
11.2
|
0.5
|
|
OE1
|
A:GLU70
|
2.1
|
10.9
|
1.0
|
|
O
|
A:O1309
|
2.3
|
11.0
|
0.5
|
|
ND1
|
A:HIS73
|
2.3
|
8.2
|
1.0
|
|
OE2
|
A:GLU36
|
2.3
|
11.8
|
0.5
|
|
O
|
A:O1308
|
2.6
|
8.2
|
0.1
|
|
CD
|
A:GLU36
|
2.6
|
10.1
|
0.5
|
|
CD
|
A:GLU36
|
3.1
|
9.2
|
0.5
|
|
CD
|
A:GLU70
|
3.1
|
7.1
|
1.0
|
|
MN
|
A:MN1304
|
3.1
|
8.0
|
0.8
|
|
MN
|
A:MN1304
|
3.2
|
8.4
|
0.1
|
|
O
|
A:HOH2531
|
3.2
|
15.7
|
0.5
|
|
CE1
|
A:HIS73
|
3.2
|
9.0
|
1.0
|
|
CG
|
A:HIS73
|
3.3
|
7.2
|
1.0
|
|
OE2
|
A:GLU70
|
3.4
|
8.0
|
1.0
|
|
OE1
|
A:GLU36
|
3.4
|
15.1
|
0.5
|
|
CB
|
A:HIS73
|
3.6
|
6.6
|
1.0
|
|
O
|
A:HOH2529
|
3.9
|
22.6
|
0.5
|
|
OG1
|
A:THR39
|
3.9
|
8.2
|
1.0
|
|
CG
|
A:GLU36
|
4.1
|
8.1
|
0.5
|
|
NE2
|
A:HIS73
|
4.3
|
9.1
|
1.0
|
|
CD2
|
A:HIS73
|
4.4
|
8.5
|
1.0
|
|
CG
|
A:GLU36
|
4.4
|
8.8
|
0.5
|
|
CG
|
A:GLU70
|
4.4
|
6.4
|
1.0
|
|
CE1
|
A:HIS188
|
4.4
|
7.7
|
1.0
|
|
ND1
|
A:HIS188
|
4.5
|
7.2
|
1.0
|
|
O
|
A:HOH2530
|
4.6
|
24.6
|
1.0
|
|
CB
|
A:GLU36
|
4.8
|
7.0
|
0.5
|
|
CB
|
A:THR39
|
4.8
|
7.2
|
1.0
|
|
NZ
|
A:LYS162
|
4.9
|
14.5
|
0.5
|
|
CB
|
A:GLU70
|
4.9
|
6.2
|
1.0
|
|
CB
|
A:GLU36
|
4.9
|
7.8
|
0.5
|
|
CA
|
A:GLU70
|
4.9
|
6.2
|
1.0
|
|
CD2
|
A:LEU181
|
5.0
|
9.0
|
1.0
|
|
Manganese binding site 2 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 2 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1303
b:7.9
occ:0.50
|
MN
|
A:MN1303
|
0.0
|
7.9
|
0.5
|
|
MN
|
A:MN1303
|
0.0
|
7.9
|
0.5
|
|
O
|
A:O1307
|
1.9
|
8.6
|
0.2
|
|
O
|
A:O1305
|
2.0
|
10.4
|
0.8
|
|
O
|
A:O1306
|
2.1
|
9.5
|
0.8
|
|
OE2
|
A:GLU36
|
2.1
|
10.7
|
0.5
|
|
OE1
|
A:GLU36
|
2.1
|
11.2
|
0.5
|
|
OE1
|
A:GLU70
|
2.1
|
10.9
|
1.0
|
|
O
|
A:O1309
|
2.3
|
11.0
|
0.5
|
|
ND1
|
A:HIS73
|
2.3
|
8.2
|
1.0
|
|
OE2
|
A:GLU36
|
2.3
|
11.8
|
0.5
|
|
O
|
A:O1308
|
2.6
|
8.2
|
0.1
|
|
CD
|
A:GLU36
|
2.6
|
10.1
|
0.5
|
|
CD
|
A:GLU36
|
3.1
|
9.2
|
0.5
|
|
CD
|
A:GLU70
|
3.1
|
7.1
|
1.0
|
|
MN
|
A:MN1304
|
3.1
|
8.0
|
0.8
|
|
MN
|
A:MN1304
|
3.2
|
8.4
|
0.1
|
|
O
|
A:HOH2531
|
3.2
|
15.7
|
0.5
|
|
CE1
|
A:HIS73
|
3.2
|
9.0
|
1.0
|
|
CG
|
A:HIS73
|
3.3
|
7.2
|
1.0
|
|
OE2
|
A:GLU70
|
3.4
|
8.0
|
1.0
|
|
OE1
|
A:GLU36
|
3.4
|
15.1
|
0.5
|
|
CB
|
A:HIS73
|
3.6
|
6.6
|
1.0
|
|
O
|
A:HOH2529
|
3.9
|
22.6
|
0.5
|
|
OG1
|
A:THR39
|
3.9
|
8.2
|
1.0
|
|
CG
|
A:GLU36
|
4.1
|
8.1
|
0.5
|
|
NE2
|
A:HIS73
|
4.3
|
9.1
|
1.0
|
|
CD2
|
A:HIS73
|
4.4
|
8.5
|
1.0
|
|
CG
|
A:GLU36
|
4.4
|
8.8
|
0.5
|
|
CG
|
A:GLU70
|
4.4
|
6.4
|
1.0
|
|
CE1
|
A:HIS188
|
4.4
|
7.7
|
1.0
|
|
ND1
|
A:HIS188
|
4.5
|
7.2
|
1.0
|
|
O
|
A:HOH2530
|
4.6
|
24.6
|
1.0
|
|
CB
|
A:GLU36
|
4.8
|
7.0
|
0.5
|
|
CB
|
A:THR39
|
4.8
|
7.2
|
1.0
|
|
NZ
|
A:LYS162
|
4.9
|
14.5
|
0.5
|
|
CB
|
A:GLU70
|
4.9
|
6.2
|
1.0
|
|
CB
|
A:GLU36
|
4.9
|
7.8
|
0.5
|
|
CA
|
A:GLU70
|
4.9
|
6.2
|
1.0
|
|
CD2
|
A:LEU181
|
5.0
|
9.0
|
1.0
|
|
Manganese binding site 3 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 3 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1304
b:8.0
occ:0.85
|
MN
|
A:MN1304
|
0.0
|
8.0
|
0.8
|
|
MN
|
A:MN1304
|
0.2
|
8.4
|
0.1
|
|
O
|
A:O1307
|
1.7
|
8.6
|
0.2
|
|
O
|
A:O1305
|
2.1
|
10.4
|
0.8
|
|
OE2
|
A:GLU70
|
2.1
|
8.0
|
1.0
|
|
OE2
|
A:GLU155
|
2.2
|
8.3
|
1.0
|
|
O
|
A:O1306
|
2.2
|
9.5
|
0.8
|
|
ND1
|
A:HIS188
|
2.3
|
7.2
|
1.0
|
|
OE1
|
A:GLU155
|
2.6
|
9.3
|
1.0
|
|
CD
|
A:GLU155
|
2.8
|
7.5
|
1.0
|
|
MN
|
A:MN1303
|
3.1
|
7.9
|
0.5
|
|
MN
|
A:MN1303
|
3.1
|
7.9
|
0.5
|
|
CE1
|
A:HIS188
|
3.1
|
7.7
|
1.0
|
|
CD
|
A:GLU70
|
3.1
|
7.1
|
1.0
|
|
O
|
A:O1308
|
3.2
|
8.2
|
0.1
|
|
OE1
|
A:GLU70
|
3.4
|
10.9
|
1.0
|
|
CG
|
A:HIS188
|
3.4
|
6.6
|
1.0
|
|
O
|
A:HOH2529
|
3.8
|
22.6
|
0.5
|
|
CB
|
A:HIS188
|
3.8
|
6.7
|
1.0
|
|
O
|
A:HOH2531
|
4.1
|
15.7
|
0.5
|
|
CG
|
A:GLU155
|
4.2
|
7.2
|
1.0
|
|
CB
|
A:THR39
|
4.2
|
7.2
|
1.0
|
|
O
|
A:O1309
|
4.3
|
11.0
|
0.5
|
|
CG2
|
A:THR39
|
4.3
|
9.2
|
1.0
|
|
NE2
|
A:HIS188
|
4.3
|
7.9
|
1.0
|
|
OG1
|
A:THR39
|
4.3
|
8.2
|
1.0
|
|
CA
|
A:GLY185
|
4.4
|
9.1
|
1.0
|
|
CE2
|
A:TYR43
|
4.4
|
7.3
|
1.0
|
|
CG
|
A:GLU70
|
4.4
|
6.4
|
1.0
|
|
CD2
|
A:HIS188
|
4.4
|
7.1
|
1.0
|
|
OH
|
A:TYR43
|
4.6
|
8.2
|
1.0
|
|
OE1
|
A:GLU36
|
4.7
|
11.2
|
0.5
|
|
ND1
|
A:HIS73
|
4.8
|
8.2
|
1.0
|
|
O
|
A:HOH2304
|
4.9
|
17.7
|
0.5
|
|
CG2
|
A:ILE66
|
4.9
|
7.4
|
1.0
|
|
OE2
|
A:GLU36
|
4.9
|
10.7
|
0.5
|
|
N
|
A:GLY185
|
5.0
|
8.3
|
1.0
|
|
CZ
|
A:TYR43
|
5.0
|
6.7
|
1.0
|
|
OE2
|
A:GLU36
|
5.0
|
11.8
|
0.5
|
|
Manganese binding site 4 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 4 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn1304
b:8.4
occ:0.15
|
MN
|
A:MN1304
|
0.0
|
8.4
|
0.1
|
|
MN
|
A:MN1304
|
0.2
|
8.0
|
0.8
|
|
O
|
A:O1307
|
1.9
|
8.6
|
0.2
|
|
OE2
|
A:GLU70
|
2.0
|
8.0
|
1.0
|
|
OE2
|
A:GLU155
|
2.1
|
8.3
|
1.0
|
|
O
|
A:O1306
|
2.2
|
9.5
|
0.8
|
|
ND1
|
A:HIS188
|
2.2
|
7.2
|
1.0
|
|
O
|
A:O1305
|
2.3
|
10.4
|
0.8
|
|
OE1
|
A:GLU155
|
2.7
|
9.3
|
1.0
|
|
CD
|
A:GLU155
|
2.7
|
7.5
|
1.0
|
|
CD
|
A:GLU70
|
3.0
|
7.1
|
1.0
|
|
CE1
|
A:HIS188
|
3.1
|
7.7
|
1.0
|
|
MN
|
A:MN1303
|
3.2
|
7.9
|
0.5
|
|
MN
|
A:MN1303
|
3.2
|
7.9
|
0.5
|
|
O
|
A:O1308
|
3.3
|
8.2
|
0.1
|
|
OE1
|
A:GLU70
|
3.3
|
10.9
|
1.0
|
|
CG
|
A:HIS188
|
3.4
|
6.6
|
1.0
|
|
CB
|
A:HIS188
|
3.8
|
6.7
|
1.0
|
|
O
|
A:HOH2529
|
3.9
|
22.6
|
0.5
|
|
CB
|
A:THR39
|
4.2
|
7.2
|
1.0
|
|
CG
|
A:GLU155
|
4.2
|
7.2
|
1.0
|
|
CE2
|
A:TYR43
|
4.2
|
7.3
|
1.0
|
|
CG2
|
A:THR39
|
4.2
|
9.2
|
1.0
|
|
O
|
A:HOH2531
|
4.2
|
15.7
|
0.5
|
|
OG1
|
A:THR39
|
4.3
|
8.2
|
1.0
|
|
NE2
|
A:HIS188
|
4.3
|
7.9
|
1.0
|
|
CG
|
A:GLU70
|
4.3
|
6.4
|
1.0
|
|
O
|
A:O1309
|
4.4
|
11.0
|
0.5
|
|
CD2
|
A:HIS188
|
4.4
|
7.1
|
1.0
|
|
OH
|
A:TYR43
|
4.5
|
8.2
|
1.0
|
|
CA
|
A:GLY185
|
4.5
|
9.1
|
1.0
|
|
OE1
|
A:GLU36
|
4.8
|
11.2
|
0.5
|
|
CG2
|
A:ILE66
|
4.8
|
7.4
|
1.0
|
|
CZ
|
A:TYR43
|
4.8
|
6.7
|
1.0
|
|
ND1
|
A:HIS73
|
4.8
|
8.2
|
1.0
|
|
OE2
|
A:GLU36
|
5.0
|
10.7
|
0.5
|
|
O
|
A:HOH2304
|
5.0
|
17.7
|
0.5
|
|
Manganese binding site 5 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 5 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn1306
b:8.1
occ:0.50
|
MN
|
B:MN1306
|
0.0
|
8.1
|
0.5
|
|
MN
|
B:MN1306
|
0.0
|
8.1
|
0.5
|
|
O
|
B:O1310
|
2.0
|
10.3
|
0.2
|
|
OE1
|
B:GLU36
|
2.0
|
12.0
|
0.4
|
|
O
|
B:O1309
|
2.1
|
9.6
|
0.8
|
|
O
|
B:O1308
|
2.1
|
11.1
|
0.8
|
|
OE1
|
B:GLU36
|
2.1
|
9.3
|
0.6
|
|
OE1
|
B:GLU70
|
2.1
|
11.5
|
1.0
|
|
ND1
|
B:HIS73
|
2.2
|
8.1
|
1.0
|
|
O
|
B:O1312
|
2.3
|
9.2
|
0.4
|
|
O
|
B:O1311
|
2.6
|
9.6
|
0.2
|
|
CD
|
B:GLU36
|
2.8
|
9.3
|
0.6
|
|
OE2
|
B:GLU36
|
2.8
|
17.7
|
0.6
|
|
CD
|
B:GLU36
|
3.0
|
11.7
|
0.4
|
|
CD
|
B:GLU70
|
3.1
|
7.2
|
1.0
|
|
CE1
|
B:HIS73
|
3.1
|
9.2
|
1.0
|
|
MN
|
B:MN1307
|
3.1
|
8.5
|
0.2
|
|
MN
|
B:MN1307
|
3.1
|
8.3
|
0.8
|
|
O
|
B:HOH2511
|
3.2
|
12.4
|
0.3
|
|
CG
|
B:HIS73
|
3.3
|
7.1
|
1.0
|
|
OE2
|
B:GLU36
|
3.3
|
12.8
|
0.4
|
|
OE2
|
B:GLU70
|
3.4
|
8.3
|
1.0
|
|
CB
|
B:HIS73
|
3.6
|
6.9
|
1.0
|
|
OG1
|
B:THR39
|
3.9
|
8.1
|
1.0
|
|
O
|
B:HOH2295
|
3.9
|
30.6
|
0.7
|
|
CG
|
B:GLU36
|
4.2
|
8.5
|
0.4
|
|
CG
|
B:GLU36
|
4.3
|
8.8
|
0.6
|
|
NE2
|
B:HIS73
|
4.3
|
9.5
|
1.0
|
|
CD2
|
B:HIS73
|
4.4
|
8.0
|
1.0
|
|
CE1
|
B:HIS188
|
4.4
|
7.7
|
1.0
|
|
CG
|
B:GLU70
|
4.5
|
6.6
|
1.0
|
|
ND1
|
B:HIS188
|
4.5
|
7.4
|
1.0
|
|
O
|
B:HOH2105
|
4.6
|
24.6
|
1.0
|
|
CB
|
B:GLU36
|
4.7
|
7.8
|
0.4
|
|
NZ
|
B:LYS162
|
4.8
|
16.6
|
0.6
|
|
CB
|
B:THR39
|
4.8
|
7.0
|
1.0
|
|
CB
|
B:GLU70
|
4.9
|
6.6
|
1.0
|
|
CA
|
B:GLU70
|
4.9
|
6.3
|
1.0
|
|
CB
|
B:GLU36
|
4.9
|
7.5
|
0.6
|
|
CD2
|
B:LEU181
|
5.0
|
9.2
|
1.0
|
|
Manganese binding site 6 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 6 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn1306
b:8.1
occ:0.50
|
MN
|
B:MN1306
|
0.0
|
8.1
|
0.5
|
|
MN
|
B:MN1306
|
0.0
|
8.1
|
0.5
|
|
O
|
B:O1310
|
2.0
|
10.3
|
0.2
|
|
OE1
|
B:GLU36
|
2.0
|
12.0
|
0.4
|
|
O
|
B:O1309
|
2.1
|
9.6
|
0.8
|
|
O
|
B:O1308
|
2.1
|
11.1
|
0.8
|
|
OE1
|
B:GLU36
|
2.1
|
9.3
|
0.6
|
|
OE1
|
B:GLU70
|
2.1
|
11.5
|
1.0
|
|
ND1
|
B:HIS73
|
2.2
|
8.1
|
1.0
|
|
O
|
B:O1312
|
2.3
|
9.2
|
0.4
|
|
O
|
B:O1311
|
2.6
|
9.6
|
0.2
|
|
CD
|
B:GLU36
|
2.8
|
9.3
|
0.6
|
|
OE2
|
B:GLU36
|
2.8
|
17.7
|
0.6
|
|
CD
|
B:GLU36
|
3.0
|
11.7
|
0.4
|
|
CD
|
B:GLU70
|
3.1
|
7.2
|
1.0
|
|
CE1
|
B:HIS73
|
3.1
|
9.2
|
1.0
|
|
MN
|
B:MN1307
|
3.1
|
8.5
|
0.2
|
|
MN
|
B:MN1307
|
3.1
|
8.3
|
0.8
|
|
O
|
B:HOH2511
|
3.2
|
12.4
|
0.3
|
|
CG
|
B:HIS73
|
3.3
|
7.1
|
1.0
|
|
OE2
|
B:GLU36
|
3.3
|
12.8
|
0.4
|
|
OE2
|
B:GLU70
|
3.4
|
8.3
|
1.0
|
|
CB
|
B:HIS73
|
3.6
|
6.9
|
1.0
|
|
OG1
|
B:THR39
|
3.9
|
8.1
|
1.0
|
|
O
|
B:HOH2295
|
3.9
|
30.6
|
0.7
|
|
CG
|
B:GLU36
|
4.2
|
8.5
|
0.4
|
|
CG
|
B:GLU36
|
4.3
|
8.8
|
0.6
|
|
NE2
|
B:HIS73
|
4.3
|
9.5
|
1.0
|
|
CD2
|
B:HIS73
|
4.4
|
8.0
|
1.0
|
|
CE1
|
B:HIS188
|
4.4
|
7.7
|
1.0
|
|
CG
|
B:GLU70
|
4.5
|
6.6
|
1.0
|
|
ND1
|
B:HIS188
|
4.5
|
7.4
|
1.0
|
|
O
|
B:HOH2105
|
4.6
|
24.6
|
1.0
|
|
CB
|
B:GLU36
|
4.7
|
7.8
|
0.4
|
|
NZ
|
B:LYS162
|
4.8
|
16.6
|
0.6
|
|
CB
|
B:THR39
|
4.8
|
7.0
|
1.0
|
|
CB
|
B:GLU70
|
4.9
|
6.6
|
1.0
|
|
CA
|
B:GLU70
|
4.9
|
6.3
|
1.0
|
|
CB
|
B:GLU36
|
4.9
|
7.5
|
0.6
|
|
CD2
|
B:LEU181
|
5.0
|
9.2
|
1.0
|
|
Manganese binding site 7 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 7 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn1307
b:8.3
occ:0.80
|
MN
|
B:MN1307
|
0.0
|
8.3
|
0.8
|
|
MN
|
B:MN1307
|
0.0
|
8.5
|
0.2
|
|
O
|
B:O1310
|
1.7
|
10.3
|
0.2
|
|
OE2
|
B:GLU70
|
2.1
|
8.3
|
1.0
|
|
O
|
B:O1308
|
2.2
|
11.1
|
0.8
|
|
OE2
|
B:GLU155
|
2.2
|
8.2
|
1.0
|
|
O
|
B:O1309
|
2.2
|
9.6
|
0.8
|
|
ND1
|
B:HIS188
|
2.2
|
7.4
|
1.0
|
|
OE1
|
B:GLU155
|
2.6
|
9.7
|
1.0
|
|
CD
|
B:GLU155
|
2.8
|
7.4
|
1.0
|
|
CE1
|
B:HIS188
|
3.1
|
7.7
|
1.0
|
|
CD
|
B:GLU70
|
3.1
|
7.2
|
1.0
|
|
MN
|
B:MN1306
|
3.1
|
8.1
|
0.5
|
|
MN
|
B:MN1306
|
3.1
|
8.1
|
0.5
|
|
O
|
B:O1311
|
3.3
|
9.6
|
0.2
|
|
OE1
|
B:GLU70
|
3.4
|
11.5
|
1.0
|
|
CG
|
B:HIS188
|
3.4
|
6.8
|
1.0
|
|
CB
|
B:HIS188
|
3.8
|
6.9
|
1.0
|
|
O
|
B:HOH2295
|
3.9
|
30.6
|
0.7
|
|
O
|
B:HOH2511
|
4.1
|
12.4
|
0.3
|
|
CG
|
B:GLU155
|
4.2
|
7.2
|
1.0
|
|
CB
|
B:THR39
|
4.3
|
7.0
|
1.0
|
|
CG2
|
B:THR39
|
4.3
|
8.7
|
1.0
|
|
NE2
|
B:HIS188
|
4.3
|
7.8
|
1.0
|
|
OG1
|
B:THR39
|
4.3
|
8.1
|
1.0
|
|
O
|
B:O1312
|
4.3
|
9.2
|
0.4
|
|
CE2
|
B:TYR43
|
4.4
|
7.0
|
1.0
|
|
CA
|
B:GLY185
|
4.4
|
9.0
|
1.0
|
|
CG
|
B:GLU70
|
4.4
|
6.6
|
1.0
|
|
CD2
|
B:HIS188
|
4.4
|
7.9
|
1.0
|
|
OH
|
B:TYR43
|
4.6
|
8.1
|
1.0
|
|
ND1
|
B:HIS73
|
4.7
|
8.1
|
1.0
|
|
OE1
|
B:GLU36
|
4.9
|
9.3
|
0.6
|
|
CG2
|
B:ILE66
|
4.9
|
7.4
|
1.0
|
|
CE1
|
B:HIS73
|
4.9
|
9.2
|
1.0
|
|
OE1
|
B:GLU36
|
4.9
|
12.0
|
0.4
|
|
CZ
|
B:TYR43
|
4.9
|
7.0
|
1.0
|
|
O
|
B:HOH2286
|
5.0
|
22.3
|
1.0
|
|
Manganese binding site 8 out
of 8 in 2v8u
Go back to
Manganese Binding Sites List in 2v8u
Manganese binding site 8 out
of 8 in the Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Atomic Resolution Structure of Mn Catalase From Thermus Thermophilus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn1307
b:8.5
occ:0.20
|
MN
|
B:MN1307
|
0.0
|
8.5
|
0.2
|
|
MN
|
B:MN1307
|
0.0
|
8.3
|
0.8
|
|
O
|
B:O1310
|
1.7
|
10.3
|
0.2
|
|
O
|
B:O1308
|
2.1
|
11.1
|
0.8
|
|
OE2
|
B:GLU70
|
2.2
|
8.3
|
1.0
|
|
OE2
|
B:GLU155
|
2.2
|
8.2
|
1.0
|
|
O
|
B:O1309
|
2.2
|
9.6
|
0.8
|
|
ND1
|
B:HIS188
|
2.2
|
7.4
|
1.0
|
|
OE1
|
B:GLU155
|
2.6
|
9.7
|
1.0
|
|
CD
|
B:GLU155
|
2.8
|
7.4
|
1.0
|
|
CE1
|
B:HIS188
|
3.1
|
7.7
|
1.0
|
|
CD
|
B:GLU70
|
3.1
|
7.2
|
1.0
|
|
MN
|
B:MN1306
|
3.1
|
8.1
|
0.5
|
|
MN
|
B:MN1306
|
3.1
|
8.1
|
0.5
|
|
O
|
B:O1311
|
3.3
|
9.6
|
0.2
|
|
OE1
|
B:GLU70
|
3.4
|
11.5
|
1.0
|
|
CG
|
B:HIS188
|
3.4
|
6.8
|
1.0
|
|
CB
|
B:HIS188
|
3.8
|
6.9
|
1.0
|
|
O
|
B:HOH2295
|
3.8
|
30.6
|
0.7
|
|
O
|
B:HOH2511
|
4.1
|
12.4
|
0.3
|
|
CG
|
B:GLU155
|
4.2
|
7.2
|
1.0
|
|
CB
|
B:THR39
|
4.3
|
7.0
|
1.0
|
|
CG2
|
B:THR39
|
4.3
|
8.7
|
1.0
|
|
O
|
B:O1312
|
4.3
|
9.2
|
0.4
|
|
NE2
|
B:HIS188
|
4.3
|
7.8
|
1.0
|
|
OG1
|
B:THR39
|
4.3
|
8.1
|
1.0
|
|
CA
|
B:GLY185
|
4.4
|
9.0
|
1.0
|
|
CE2
|
B:TYR43
|
4.4
|
7.0
|
1.0
|
|
CD2
|
B:HIS188
|
4.5
|
7.9
|
1.0
|
|
CG
|
B:GLU70
|
4.5
|
6.6
|
1.0
|
|
OH
|
B:TYR43
|
4.6
|
8.1
|
1.0
|
|
ND1
|
B:HIS73
|
4.7
|
8.1
|
1.0
|
|
OE1
|
B:GLU36
|
4.8
|
9.3
|
0.6
|
|
CE1
|
B:HIS73
|
4.8
|
9.2
|
1.0
|
|
CG2
|
B:ILE66
|
4.9
|
7.4
|
1.0
|
|
OE1
|
B:GLU36
|
4.9
|
12.0
|
0.4
|
|
O
|
B:HOH2286
|
4.9
|
22.3
|
1.0
|
|
CZ
|
B:TYR43
|
5.0
|
7.0
|
1.0
|
|
N
|
B:GLY185
|
5.0
|
8.6
|
1.0
|
|
Reference:
S.V.Antonyuk,
W.R.Melik-Adamyan,
A.N.Popov,
V.S.Lamsin,
P.D.Hempstead,
P.M.Harrison,
P.J.Artymyuk,
V.V.Barynin.
Three-Dimentional Structure of the Enzyme Dimanganese Catalase From Thermus Thermophilus at 1 Angstrom Resolution Crystallogr.Rep.(Transl. V. 45 105 2000KRISTALLOGRAFIYA).
ISSN: ISSN 1063-7745
Page generated: Sat Oct 5 15:15:18 2024
|
