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Manganese in PDB 2v8t: Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride

Enzymatic activity of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride

All present enzymatic activity of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride:
1.11.1.6;

Protein crystallography data

The structure of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride, PDB code: 2v8t was solved by S.V.Antonyuk, V.V.Barynin, A.A.Vaguine, W.R.Melik-Adamyan, A.N.Popov, V.S.Lamsin, P.M.Harrison, P.J.Artymiuk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 0.98
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 132.070, 132.070, 132.070, 90.00, 90.00, 90.00
R / Rfree (%) 10.1 / 11.7

Other elements in 2v8t:

The structure of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride (pdb code 2v8t). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride, PDB code: 2v8t:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 2v8t

Go back to Manganese Binding Sites List in 2v8t
Manganese binding site 1 out of 4 in the Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1303

b:7.5
occ:1.00
 O A:HOH2503 2.1 7.2 0.2
OE1 A:GLU36 2.1 9.8 0.2
OE1 A:GLU70 2.1 11.3 1.0
OE1 A:GLU36 2.2 8.0 0.8
ND1 A:HIS73 2.2 7.6 1.0
O A:HOH2504 2.2 11.6 0.2
OE2 A:GLU36 2.3 8.5 0.8
CL A:CL1305 2.5 7.8 0.8
CD A:GLU36 2.6 7.2 0.8
CL A:CL1306 2.6 8.3 0.8
CD A:GLU70 3.1 7.5 1.0
CE1 A:HIS73 3.2 8.1 1.0
CD A:GLU36 3.2 8.8 0.2
CG A:HIS73 3.3 7.0 1.0
MN A:MN1304 3.3 7.1 1.0
OE2 A:GLU70 3.4 8.9 1.0
O A:HOH2288 3.6 17.3 0.2
CB A:HIS73 3.6 6.8 1.0
OE2 A:GLU36 3.7 12.0 0.2
CG A:GLU36 4.1 7.9 0.8
OG1 A:THR39 4.1 8.4 1.0
NE2 A:HIS73 4.3 8.6 1.0
CD2 A:HIS73 4.4 8.5 1.0
CG A:GLU36 4.4 7.9 0.2
CG A:GLU70 4.4 6.8 1.0
CE1 A:HIS188 4.5 7.7 1.0
O A:HOH2084 4.6 12.4 0.7
NZ A:LYS162 4.6 11.2 0.7
ND1 A:HIS188 4.6 7.1 1.0
O A:HOH2287 4.7 36.1 0.7
CB A:GLU70 4.8 6.5 1.0
O A:HOH2289 4.8 19.1 0.3
CA A:GLU70 4.8 6.2 1.0
CD2 A:LEU181 4.8 8.7 1.0
CB A:GLU36 4.8 7.2 0.2
CB A:GLU36 4.9 7.2 0.8

Manganese binding site 2 out of 4 in 2v8t

Go back to Manganese Binding Sites List in 2v8t
Manganese binding site 2 out of 4 in the Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1304

b:7.1
occ:1.00
 OE2 A:GLU70 2.1 8.9 1.0
O A:HOH2503 2.2 7.2 0.2
OE2 A:GLU155 2.2 7.5 1.0
ND1 A:HIS188 2.2 7.1 1.0
OE1 A:GLU155 2.4 7.5 1.0
CL A:CL1306 2.5 8.3 0.8
CL A:CL1305 2.6 7.8 0.8
CD A:GLU155 2.7 6.9 1.0
CD A:GLU70 3.1 7.5 1.0
CE1 A:HIS188 3.1 7.7 1.0
MN A:MN1303 3.3 7.5 1.0
OE1 A:GLU70 3.3 11.3 1.0
CG A:HIS188 3.4 6.5 1.0
CB A:HIS188 3.7 6.9 1.0
O A:HOH2288 3.8 17.3 0.2
O A:HOH2504 4.0 11.6 0.2
CG A:GLU155 4.2 7.1 1.0
NE2 A:HIS188 4.3 7.4 1.0
O A:HOH2290 4.4 14.2 1.0
CD2 A:HIS188 4.4 7.2 1.0
CE2 A:TYR43 4.5 7.0 1.0
CG A:GLU70 4.5 6.8 1.0
CB A:THR39 4.5 7.9 1.0
CA A:GLY185 4.5 8.1 1.0
OG1 A:THR39 4.5 8.4 1.0
CG2 A:THR39 4.6 10.6 1.0
OH A:TYR43 4.6 8.1 1.0
ND1 A:HIS73 4.8 7.6 1.0
CG2 A:ILE66 4.9 7.6 1.0
OE1 A:GLU36 4.9 8.0 0.8
O A:ARG184 5.0 7.6 1.0

Manganese binding site 3 out of 4 in 2v8t

Go back to Manganese Binding Sites List in 2v8t
Manganese binding site 3 out of 4 in the Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1305

b:7.8
occ:1.00
 O B:HOH2481 2.1 7.9 0.2
OE1 B:GLU36 2.1 6.8 0.1
OE1 B:GLU70 2.1 11.9 1.0
OE1 B:GLU36 2.1 9.3 0.8
O B:HOH2482 2.2 11.1 0.2
ND1 B:HIS73 2.2 7.9 1.0
OE2 B:GLU36 2.3 10.6 0.8
CL B:CL1307 2.5 9.4 0.9
CD B:GLU36 2.6 8.3 0.8
CL B:CL1308 2.6 9.3 0.8
CD B:GLU70 3.1 7.4 1.0
CE1 B:HIS73 3.2 8.6 1.0
CD B:GLU36 3.2 8.3 0.1
CG B:HIS73 3.3 7.3 1.0
MN B:MN1306 3.3 7.4 1.0
OE2 B:GLU70 3.4 8.9 1.0
CB B:HIS73 3.6 7.2 1.0
OE2 B:GLU36 3.6 8.4 0.1
CG B:GLU36 4.1 8.7 0.8
OG1 B:THR39 4.1 8.7 1.0
NE2 B:HIS73 4.3 9.1 1.0
CD2 B:HIS73 4.4 8.6 1.0
CG B:GLU70 4.4 6.8 1.0
CG B:GLU36 4.4 7.8 0.1
CE1 B:HIS188 4.5 7.8 1.0
O B:HOH2090 4.6 12.3 0.7
ND1 B:HIS188 4.6 7.6 1.0
NZ B:LYS162 4.6 12.9 0.8
NZ B:LYS162 4.7 11.8 0.2
CB B:GLU70 4.8 6.5 1.0
CB B:GLU36 4.8 7.8 0.8
CA B:GLU70 4.8 6.6 1.0
CB B:GLU36 4.9 7.5 0.1
CD2 B:LEU181 4.9 8.9 1.0
CD1 B:LEU181 5.0 9.5 1.0

Manganese binding site 4 out of 4 in 2v8t

Go back to Manganese Binding Sites List in 2v8t
Manganese binding site 4 out of 4 in the Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Mn Catalase From Thermus Thermophilus Complexed with Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1306

b:7.4
occ:1.00
 OE2 B:GLU70 2.1 8.9 1.0
O B:HOH2481 2.2 7.9 0.2
OE2 B:GLU155 2.2 8.0 1.0
ND1 B:HIS188 2.2 7.6 1.0
OE1 B:GLU155 2.4 7.9 1.0
CL B:CL1308 2.5 9.3 0.8
CL B:CL1307 2.6 9.4 0.9
CD B:GLU155 2.7 7.3 1.0
CD B:GLU70 3.1 7.4 1.0
CE1 B:HIS188 3.1 7.8 1.0
MN B:MN1305 3.3 7.8 1.0
CG B:HIS188 3.4 7.0 1.0
OE1 B:GLU70 3.4 11.9 1.0
CB B:HIS188 3.7 6.9 1.0
O B:HOH2482 4.0 11.1 0.2
CG B:GLU155 4.2 7.2 1.0
NE2 B:HIS188 4.3 8.0 1.0
O B:HOH2264 4.4 10.7 0.5
CA B:GLY185 4.4 8.6 1.0
CD2 B:HIS188 4.4 7.3 1.0
CG B:GLU70 4.5 6.8 1.0
CE2 B:TYR43 4.5 7.1 1.0
CB B:THR39 4.5 8.2 1.0
OG1 B:THR39 4.5 8.7 1.0
CG2 B:THR39 4.6 11.1 1.0
OH B:TYR43 4.6 7.9 1.0
O B:HOH2265 4.8 13.3 0.5
ND1 B:HIS73 4.8 7.9 1.0
CG2 B:ILE66 4.9 7.9 1.0
OE1 B:GLU36 4.9 9.3 0.8

Reference:

S.V.Antonyuk, W.R.Melik-Adamyan, A.N.Popov, V.S.Lamsin, P.D.Hempstead, P.M.Harrison, P.J.Artymyuk, V.V.Barynin. Three-Dimentional Structure of the Enzyme Dimanganese Catalase From Thermus Thermophilus at 1 Angstrom Resolution Crystallogr.Rep.(Transl. V. 45 105 2000KRISTALLOGRAFIYA).
ISSN: ISSN 1063-7745
Page generated: Sat Oct 5 15:15:18 2024

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