Manganese in PDB 2v0s: Crystal Structure of A Hairpin Exchange Variant (LR1) of the Targeting Line-1 Retrotransposon Endonuclease

The structure of Crystal Structure of A Hairpin Exchange Variant (LR1) of the Targeting Line-1 Retrotransposon Endonuclease, PDB code: 2v0s was solved by K.Repanas, N.Zingler, L.E.Layer, G.G.Schumann, A.Perrakis, O.Weichenrieder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	80.00 / 1.8
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	58.698, 67.648, 128.278, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 22.6

The binding sites of Manganese atom in the Crystal Structure of A Hairpin Exchange Variant (LR1) of the Targeting Line-1 Retrotransposon Endonuclease (pdb code 2v0s). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of A Hairpin Exchange Variant (LR1) of the Targeting Line-1 Retrotransposon Endonuclease, PDB code: 2v0s:

Manganese binding site 1 out of 1 in the Crystal Structure of A Hairpin Exchange Variant (LR1) of the Targeting Line-1 Retrotransposon Endonuclease


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Hairpin Exchange Variant (LR1) of the Targeting Line-1 Retrotransposon Endonuclease within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1237 b:23.6 occ:1.00 O A:HOH2177 2.1 20.4 1.0 O3 A:GOL1240 2.1 32.8 1.0 OE2 A:GLU43 2.3 17.4 1.0 O A:HOH2178 2.5 23.5 1.0 C3 A:GOL1240 3.0 30.2 1.0 CD A:GLU43 3.0 17.7 1.0 OE1 A:GLU43 3.1 26.4 1.0 C1 A:GOL1240 3.2 28.8 1.0 C2 A:GOL1240 3.7 28.4 1.0 O1 A:GOL1240 4.0 29.7 1.0 OD1 A:ASN16 4.2 26.6 1.0 ND2 A:ASN14 4.3 13.7 1.0 OD2 A:ASP227 4.3 26.6 1.0 OH A:TYR115 4.4 20.7 1.0 CG A:GLU43 4.5 16.2 1.0 O2 A:GOL1240 4.5 19.3 1.0 OD1 A:ASN14 4.6 13.5 1.0 OD1 A:ASP227 4.6 24.7 1.0 NE2 A:HIS228 4.7 13.9 1.0 CG A:ASN16 4.9 20.3 1.0 CG A:ASN14 4.9 12.7 1.0 CG A:ASP227 4.9 21.0 1.0

K.Repanas, N.Zingler, L.E.Layer, G.G.Schumann, A.Perrakis, O.Weichenrieder. Determinants For Dna Target Structure Selectivity of the Human Line-1 Retrotransposon Endonuclease. Nucleic Acids Res. V. 35 4914 2007.
ISSN: ISSN 0305-1048
PubMed: 17626046
DOI: 10.1093/NAR/GKM516