Chemical elements
  Manganese
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    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
      2r22
      2r34
      2r8d
      2rcv
      2rix
      2rj0
      2rj1
      2rj4
      2rj5
      2rj7
      2rj8
      2rj9
      2rk7
      2rk8
      2rka
      2rkd
      2rke
      2rl8
      2rl9
      2rla
      2sba
      2tep
      2uy8
      2uy9
      2uya
      2uyb
      2v09
      2v0s
      2v3x
      2v3y
      2v3z
      2v8j
      2v8t
      2v8u
      2vbe
      2vbm
      2vfz
      2vgb
      2vgf
      2vgg
      2vgi
      2vhc
      2vhg
      2vic
      2vju
      2vkd
      2vnp
      2vnq
      2vqa
      2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of R92A Mutant of Bacillus Subtilis Oxalate Decarboxylase Oxdc (pdb 2uy8)






The binding sites of Manganese atom in the structure of R92A Mutant of Bacillus Subtilis Oxalate Decarboxylase Oxdc (pdb code 2uy8). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 2uy8 structure was solved by V.J.JUST, M.R.BURRELL, L.BOWATER, I.MCROBBIE, C.E.M.STEVENSON, D.M.LAWSON, S.BORNEMANN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)28.1-2.8
Space groupH32
a (A)154.486
b (A)154.486
c (A)122.301
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)13.4
Rfree (%)21.1


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 2uy8


Manganese binding site 1 out of 2 in 2uy8
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 2uy8
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 2uy8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His95, A: His97, A: Glu101, A: His140, A: Phe155, A: Hoh2213, A: Hoh2214,

conact list:


AtomAtomDistance (A)
MnNE2 A:His952.24
MnND1 A:His954.25
MnCD2 A:His953.30
MnCE1 A:His953.09
MnCG A:His954.38
MnNE2 A:His971.99
MnND1 A:His974.06
MnCD2 A:His973.03
MnCE1 A:His972.94
MnCG A:His974.13
MnOE1 A:Glu1012.04
MnCB A:Glu1014.65
MnOE2 A:Glu1013.43
MnCD A:Glu1013.08
MnCG A:Glu1014.39
MnNE2 A:His1402.24
MnND1 A:His1404.32
MnCD2 A:His1403.23
MnCE1 A:His1403.20
MnCG A:His1404.37
MnCE2 A:Phe1554.30
MnCZ A:Phe1554.39
MnO A:Hoh22132.06
MnO A:Hoh22142.46

interactive model:


Manganese binding site 2 out of 2 in 2uy8


Manganese binding site 2 out of 2 in 2uy8
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 2uy8
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 2uy8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg270, A: His273, A: His275, A: Glu280, A: His319, A: Glu333, A: Phe335, A: Hoh2215,

conact list:


AtomAtomDistance (A)
MnNE A:Arg2704.93
MnNH2 A:Arg2704.77
MnNE2 A:His2732.35
MnND1 A:His2734.41
MnCD2 A:His2733.28
MnCE1 A:His2733.31
MnCG A:His2734.42
MnNE2 A:His2752.08
MnND1 A:His2754.16
MnCD2 A:His2753.04
MnCE1 A:His2753.07
MnCG A:His2754.18
MnOE1 A:Glu2802.08
MnCB A:Glu2804.75
MnOE2 A:Glu2803.60
MnCD A:Glu2803.17
MnCG A:Glu2804.49
MnNE2 A:His3192.26
MnND1 A:His3194.33
MnCD2 A:His3193.27
MnCE1 A:His3193.20
MnCG A:His3194.39
MnOE1 A:Glu3334.48
MnOE2 A:Glu3333.34
MnCD A:Glu3334.00
MnCG A:Glu3334.81
MnCZ A:Phe3354.44
MnCE1 A:Phe3354.95
MnO A:Hoh22152.14

interactive model:




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