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Manganese in PDB 2r21: Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn)

Protein crystallography data

The structure of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn), PDB code: 2r21 was solved by Y.Timsit, S.Bombard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.59
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 25.250, 25.650, 29.720, 98.13, 106.15, 100.83
R / Rfree (%) 16.9 / 19.1

Other elements in 2r21:

The structure of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) also contains other interesting chemical elements:

Bromine (Br) 2 atoms
Sodium (Na) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) (pdb code 2r21). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn), PDB code: 2r21:

Manganese binding site 1 out of 1 in 2r21

Go back to Manganese Binding Sites List in 2r21
Manganese binding site 1 out of 1 in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn17

b:48.3
occ:0.50
O A:HOH30 2.1 21.4 0.8
O A:HOH62 2.2 20.0 0.9
O A:HOH23 2.2 18.4 1.0
O A:HOH64 2.7 29.2 1.0
O A:HOH22 3.7 14.2 1.0
O B:HOH64 4.2 29.1 1.0
O A:HOH33 4.2 18.2 1.0
O B:HOH89 4.2 28.9 0.8
N4 A:C11 4.3 11.2 1.0
O6 A:G12 4.3 10.2 1.0
C5 A:C11 4.6 11.2 1.0
N7 A:G12 4.7 7.8 1.0
C4 A:C11 4.8 10.6 1.0

Reference:

Y.Timsit, S.Bombard. 1.3 A Resolution Structure of the Tridecamer R(Gcguuugaaacgc) To Be Published.
Page generated: Sat Oct 5 15:07:00 2024

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