Manganese in PDB 2qgi: The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus

The structure of The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus, PDB code: 2qgi was solved by C.Enroth, A.Strid, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.99 / 1.65
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	123.370, 89.928, 69.572, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 18.4

The binding sites of Manganese atom in the The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus (pdb code 2qgi). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus, PDB code: 2qgi:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn300 b:16.7 occ:1.00 OD1 A:ASP84 2.2 14.4 1.0 O A:HOH435 2.2 19.4 1.0 O A:HOH429 2.2 20.2 1.0 NE2 A:HIS202 2.3 15.5 1.0 ND1 A:HIS82 2.3 15.4 1.0 OD2 A:ASP84 2.5 17.6 1.0 CG A:ASP84 2.7 14.0 1.0 CD2 A:HIS202 3.2 16.1 1.0 CG A:HIS82 3.2 15.1 1.0 CE1 A:HIS202 3.3 18.3 1.0 CE1 A:HIS82 3.3 15.4 1.0 CB A:HIS82 3.5 13.1 1.0 CA A:GLY204 4.0 20.7 1.0 CB A:ASP84 4.3 14.3 1.0 N A:GLY204 4.3 19.4 1.0 O A:HOH462 4.4 26.1 1.0 ND1 A:HIS202 4.4 15.5 1.0 CD2 A:HIS82 4.4 14.5 1.0 NE2 A:HIS82 4.4 16.5 1.0 CG A:HIS202 4.4 12.9 1.0 O A:HOH323 4.7 39.4 1.0 O A:HOH421 4.7 21.7 1.0 CB A:CYS156 4.8 12.6 1.0 N A:ASP84 4.9 11.7 1.0 C A:GLY204 4.9 22.4 1.0 CA A:ASP84 4.9 13.1 1.0 CA A:HIS82 5.0 12.8 1.0

Manganese binding site 2 out of 2 in the The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Udp Complex Structure of the Sixth Gene Product of the F1-Atpase Operon of Rhodobacter Blasticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn300 b:16.7 occ:1.00 OD1 B:ASP84 2.2 16.1 1.0 O1B B:UDP800 2.3 22.2 1.0 NE2 B:HIS202 2.3 16.8 1.0 O1A B:UDP800 2.3 21.9 1.0 ND1 B:HIS82 2.3 13.9 1.0 OD2 B:ASP84 2.5 19.7 1.0 CG B:ASP84 2.7 15.4 1.0 CD2 B:HIS202 3.2 14.2 1.0 CE1 B:HIS82 3.3 14.8 1.0 CE1 B:HIS202 3.3 17.4 1.0 CG B:HIS82 3.3 14.2 1.0 PB B:UDP800 3.4 25.7 1.0 PA B:UDP800 3.5 24.4 1.0 CB B:HIS82 3.6 12.6 1.0 O3A B:UDP800 3.8 28.0 1.0 CA B:GLY204 4.0 31.4 1.0 CB B:ASP84 4.2 13.8 1.0 O3B B:UDP800 4.2 26.3 1.0 N B:GLY204 4.3 23.4 1.0 C5' B:UDP800 4.3 24.6 1.0 NE2 B:HIS82 4.4 14.1 1.0 CG B:HIS202 4.4 16.4 1.0 ND1 B:HIS202 4.4 16.2 1.0 O5' B:UDP800 4.4 25.2 1.0 CD2 B:HIS82 4.5 12.5 1.0 O B:HOH803 4.5 30.4 1.0 O2B B:UDP800 4.6 29.8 1.0 O2A B:UDP800 4.6 27.4 1.0 CB B:CYS156 4.9 12.4 1.0 O B:HOH946 4.9 22.5 1.0 CA B:ASP84 4.9 13.0 1.0 N B:ASP84 4.9 13.5 1.0 O B:ASP84 5.0 14.9 1.0 C3' B:UDP800 5.0 23.5 1.0

C.Enroth, A.Strid. Crystal Structure of A Protein, Structurally Related to Glycosyltransferases, Encoded in the Rhodobacter Blasticus Atp Operon. Biochim.Biophys.Acta V.1784 379 2008.
ISSN: ISSN 0006-3002
PubMed: 18067873
DOI: 10.1016/J.BBAPAP.2007.11.005