Manganese in PDB 2qb6: Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex

All present enzymatic activity of Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex:
3.6.1.11;

The structure of Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex, PDB code: 2qb6 was solved by S.A.White, E.Ugochukwu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.40 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	79.660, 82.914, 119.228, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 20.1

The binding sites of Manganese atom in the Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex (pdb code 2qb6). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex, PDB code: 2qb6:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:17.3 occ:1.00 NE2 A:HIS148 2.1 10.4 1.0 OD2 A:ASP41 2.1 13.3 1.0 O A:HOH939 2.1 12.4 1.0 OD1 A:ASP127 2.2 9.8 1.0 O A:HOH948 2.2 13.8 1.0 CG A:ASP127 3.0 12.1 1.0 CE1 A:HIS148 3.0 12.4 1.0 CG A:ASP41 3.1 10.9 1.0 OD2 A:ASP127 3.1 12.4 1.0 CD2 A:HIS148 3.2 10.4 1.0 CB A:ASP41 3.5 9.7 1.0 CE1 A:HIS149 3.9 12.7 1.0 CB A:CYS169 4.1 9.8 1.0 ND1 A:HIS148 4.1 11.2 1.0 N A:CYS169 4.2 11.2 1.0 OD1 A:ASP41 4.2 11.0 1.0 CG A:HIS148 4.3 11.2 1.0 CB A:ASP127 4.3 9.9 1.0 OD2 A:ASP202 4.4 12.3 1.0 O A:HOH1062 4.5 22.1 1.0 NE2 A:HIS149 4.5 14.2 1.0 OD2 A:ASP39 4.6 15.4 1.0 CA A:CYS169 4.8 10.2 1.0 ND1 A:HIS149 4.8 9.9 1.0 CA A:ASP41 4.9 9.7 1.0 CA A:ASP127 5.0 9.8 1.0

Manganese binding site 2 out of 2 in the Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn401 b:21.5 occ:1.00 OD2 B:ASP41 2.1 15.7 1.0 O B:HOH577 2.1 14.3 1.0 OD1 B:ASP127 2.1 12.5 1.0 NE2 B:HIS148 2.2 15.8 1.0 O B:HOH578 2.3 19.4 1.0 CG B:ASP127 3.0 13.6 1.0 CE1 B:HIS148 3.0 14.6 1.0 CG B:ASP41 3.1 14.5 1.0 OD2 B:ASP127 3.1 13.8 1.0 CD2 B:HIS148 3.3 13.8 1.0 CB B:ASP41 3.4 12.8 1.0 CE1 B:HIS149 3.9 19.7 1.0 CB B:CYS169 4.1 12.0 1.0 N B:CYS169 4.1 12.7 1.0 OD1 B:ASP41 4.2 14.4 1.0 ND1 B:HIS148 4.2 13.3 1.0 OD2 B:ASP202 4.3 17.4 1.0 CB B:ASP127 4.3 12.4 1.0 CG B:HIS148 4.4 12.1 1.0 NE2 B:HIS149 4.4 19.4 1.0 OD2 B:ASP39 4.5 18.6 1.0 O B:HOH643 4.6 27.4 1.0 CA B:CYS169 4.7 12.1 1.0 ND1 B:HIS149 4.8 18.1 1.0 CA B:ASP41 4.8 13.1 1.0 CA B:ASP127 4.9 12.8 1.0

E.Ugochukwu, A.L.Lovering, O.C.Mather, T.W.Young, S.A.White. The Crystal Structure of the Cytosolic Exopolyphosphatase From Saccharomyces Cerevisiae Reveals the Basis For Substrate Specificity. J.Mol.Biol. V. 371 1007 2007.
ISSN: ISSN 0022-2836
PubMed: 17599355
DOI: 10.1016/J.JMB.2007.05.066