Atomistry » Manganese » PDB 2pal-2qgi » 2py7
Atomistry »
  Manganese »
    PDB 2pal-2qgi »
      2py7 »

Manganese in PDB 2py7: Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+

Enzymatic activity of Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+

All present enzymatic activity of Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+:
4.1.1.49;

Protein crystallography data

The structure of Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+, PDB code: 2py7 was solved by L.T.J.Delbaere, J.J.H.Cotelesage, H.Goldie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.48 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.999, 95.663, 46.319, 90.00, 96.12, 90.00
R / Rfree (%) 15.5 / 21.8

Other elements in 2py7:

The structure of Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+ also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+ (pdb code 2py7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+, PDB code: 2py7:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 2py7

Go back to Manganese Binding Sites List in 2py7
Manganese binding site 1 out of 2 in the Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mn999

b:9.7
occ:1.00
OD2 X:ASP269 2.0 8.4 1.0
O1G X:ATP541 2.2 13.6 1.0
NE2 X:HIS232 2.2 3.5 1.0
O X:HOH1373 2.2 17.6 1.0
CG X:ASP269 2.8 8.8 1.0
OD1 X:ASP269 2.8 9.7 1.0
CD2 X:HIS232 3.1 5.3 1.0
CE1 X:HIS232 3.2 4.2 1.0
PG X:ATP541 3.3 14.1 1.0
O X:HOH1375 3.4 21.0 1.0
O3G X:ATP541 3.7 14.3 1.0
O2G X:ATP541 4.0 12.6 1.0
NZ X:LYS254 4.0 8.0 1.0
CE X:LYS254 4.1 8.1 1.0
O X:HOH1022 4.1 9.4 1.0
CB X:ASP269 4.2 7.6 1.0
CG X:HIS232 4.3 5.1 1.0
ND1 X:HIS232 4.3 4.2 1.0
O X:HOH1386 4.3 22.6 1.0
O X:HOH1481 4.5 33.3 1.0
O3B X:ATP541 4.6 15.8 1.0
O X:ASP269 4.8 7.6 1.0
NZ X:LYS212 4.9 9.9 1.0
CE2 X:PHE413 4.9 5.2 1.0
MG X:MG998 4.9 2.3 1.0
CA X:ASP269 5.0 7.6 1.0

Manganese binding site 2 out of 2 in 2py7

Go back to Manganese Binding Sites List in 2py7
Manganese binding site 2 out of 2 in the Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER Complexed with Atp-MG2+-MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mn1001

b:24.7
occ:1.00
NE2 X:HIS21 2.1 26.4 1.0
OD2 X:ASP19 2.1 24.0 1.0
OD1 X:ASP19 2.3 24.2 1.0
O X:HOH1488 2.4 28.0 1.0
CG X:ASP19 2.5 22.8 1.0
CE1 X:HIS21 2.9 26.4 1.0
CD2 X:HIS21 3.2 25.5 1.0
O X:HOH1296 4.0 33.1 1.0
CB X:ASP19 4.0 20.9 1.0
ND1 X:HIS21 4.0 25.9 1.0
CG X:HIS21 4.2 24.5 1.0
O X:ASP19 4.5 20.9 1.0
CA X:ASP19 4.8 20.6 1.0

Reference:

L.T.J.Delbaere, J.J.H.Cotelesage, H.Goldie. Crystal Structure of E. Coli Phosphoenolpyruvate Carboxykinase Mutant LYS213SER To Be Published.
Page generated: Tue Dec 15 04:04:43 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy