Chemical elements
  Manganese
    Isotopes
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    Production
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    Chemical properties
    Physical properties
    PDB 117e-1cs0
    PDB 1cvn-1fbg
    PDB 1fe1-1gz9
    PDB 1gzc-1j53
    PDB 1j54-1kx3
    PDB 1kx4-1mav
    PDB 1mb0-1nvm
    PDB 1nxd-1pj2
    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
      2pal
      2pel
      2pfo
      2pfq
      2pha
      2phf
      2phk
      2phn
      2pho
      2phr
      2pht
      2phu
      2phw
      2phx
      2pll
      2pml
      2pny
      2pok
      2pom
      2pxz
      2py7
      2pyj
      2pyo
      2q0m
      2q7d
      2q92
      2q93
      2q94
      2q95
      2q96
      2qb0
      2qb5
      2qb6
      2qc8
      2qcs
      2qew
      2qey
      2qf1
      2qf2
      2qgi
      2qjc
      2qjt
      2qka
      2qkc
      2qul
      2qum
      2qun
      2qvw
      2qzy
      2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Pterocarpus Angolensis Lectin (Pal) in Complex With Man-7D1 (pdb 2phr)






The binding sites of Manganese atom in the structure of Pterocarpus Angolensis Lectin (Pal) in Complex With Man-7D1 (pdb code 2phr). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 2phr structure was solved by A.GARCIA-PINO, L.BUTS, L.WYNS, A.IMBERTY, R.LORIS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)15.0-1.9
Space groupP212121
a (A)56.804
b (A)83.269
c (A)123.133
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)17.7
Rfree (%)19.7


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 2phr


Manganese binding site 1 out of 2 in 2phr
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 2phr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 2phr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu128, A: Asp130, A: Trp140, A: Asp141, A: Pro142, A: His146, A: Ile154, A: Ser156, A: Ca302, A: Hoh304, A: Hoh305, A: Hoh306, A: Hoh307,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu1282.18
MnOE2 A:Glu1283.56
MnCD A:Glu1283.21
MnCG A:Glu1284.53
MnCB A:Asp1303.57
MnOD2 A:Asp1302.24
MnOD1 A:Asp1304.30
MnCG A:Asp1303.21
MnCD1 A:Trp1404.57
MnNE1 A:Trp1404.62
MnCB A:Asp1414.33
MnOD2 A:Asp1413.56
MnOD1 A:Asp1412.22
MnCG A:Asp1413.14
MnCA A:Asp1414.80
MnCD A:Pro1424.84
MnNE2 A:His1462.31
MnND1 A:His1464.37
MnCD2 A:His1463.35
MnCE1 A:His1463.22
MnCG A:His1464.46
MnO A:Ile1544.53
MnOG A:Ser1564.30
MnCA A:Ca3024.17
MnO A:Hoh3043.87
MnO A:Hoh3052.15
MnO A:Hoh3062.29
MnO A:Hoh3074.57

interactive model:


Manganese binding site 2 out of 2 in 2phr


Manganese binding site 2 out of 2 in 2phr
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 2phr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 2phr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu128, B: Asp130, B: Trp140, B: Asp141, B: Pro142, B: His146, B: Ile154, B: Ser156, B: Ca302, B: Hoh304, B: Hoh305, B: Hoh306, B: Hoh307,

conact list:


AtomAtomDistance (A)
MnOE1 B:Glu1282.20
MnOE2 B:Glu1283.53
MnCD B:Glu1283.21
MnCG B:Glu1284.54
MnCB B:Asp1303.52
MnOD2 B:Asp1302.23
MnOD1 B:Asp1304.33
MnCG B:Asp1303.21
MnCD1 B:Trp1404.57
MnNE1 B:Trp1404.59
MnCB B:Asp1414.33
MnOD2 B:Asp1413.56
MnOD1 B:Asp1412.20
MnCG B:Asp1413.14
MnCA B:Asp1414.83
MnCD B:Pro1424.94
MnNE2 B:His1462.32
MnND1 B:His1464.35
MnCD2 B:His1463.39
MnCE1 B:His1463.18
MnCG B:His1464.48
MnO B:Ile1544.56
MnOG B:Ser1564.29
MnCA B:Ca3024.19
MnO B:Hoh3043.86
MnO B:Hoh3052.21
MnO B:Hoh3064.56
MnO B:Hoh3072.30

interactive model:




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