Manganese in PDB 2pal: Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments
Protein crystallography data
The structure of Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments, PDB code: 2pal
was solved by
J.P.Declercq,
B.Tinant,
J.Parello,
J.Rambaud,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
1.80
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.560,
57.530,
26.270,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments
(pdb code 2pal). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the
Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments, PDB code: 2pal:
Jump to Manganese binding site number:
1;
2;
3;
Manganese binding site 1 out
of 3 in 2pal
Go back to
Manganese Binding Sites List in 2pal
Manganese binding site 1 out
of 3 in the Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn110
b:10.3
occ:1.00
|
OE1
|
A:GLU101
|
2.1
|
12.9
|
1.0
|
OD1
|
A:ASP92
|
2.1
|
18.8
|
1.0
|
OD2
|
A:ASP90
|
2.1
|
12.9
|
1.0
|
OD1
|
A:ASP94
|
2.1
|
16.2
|
1.0
|
O
|
A:MET96
|
2.2
|
16.0
|
1.0
|
O
|
A:HOH246
|
2.2
|
18.1
|
1.0
|
CD
|
A:GLU101
|
3.0
|
14.1
|
1.0
|
CG
|
A:ASP94
|
3.0
|
19.6
|
1.0
|
CG
|
A:ASP92
|
3.1
|
38.0
|
1.0
|
CG
|
A:ASP90
|
3.2
|
21.9
|
1.0
|
OE2
|
A:GLU101
|
3.3
|
18.2
|
1.0
|
C
|
A:MET96
|
3.3
|
15.1
|
1.0
|
OD2
|
A:ASP94
|
3.4
|
10.6
|
1.0
|
OD2
|
A:ASP92
|
3.5
|
21.2
|
1.0
|
CB
|
A:ASP90
|
4.0
|
11.2
|
1.0
|
OD1
|
A:ASP90
|
4.0
|
11.6
|
1.0
|
CA
|
A:ASP90
|
4.1
|
7.0
|
1.0
|
N
|
A:MET96
|
4.1
|
9.6
|
1.0
|
N
|
A:ILE97
|
4.2
|
16.6
|
1.0
|
CA
|
A:ILE97
|
4.2
|
7.7
|
1.0
|
N
|
A:ASP94
|
4.2
|
32.3
|
1.0
|
CA
|
A:MET96
|
4.2
|
10.9
|
1.0
|
N
|
A:ASP92
|
4.2
|
12.5
|
1.0
|
CB
|
A:ASP94
|
4.3
|
21.2
|
1.0
|
CG
|
A:GLU101
|
4.3
|
23.3
|
1.0
|
N
|
A:GLY98
|
4.4
|
15.6
|
1.0
|
CB
|
A:ASP92
|
4.5
|
30.8
|
1.0
|
CB
|
A:MET96
|
4.5
|
20.9
|
1.0
|
C
|
A:ASP90
|
4.6
|
14.7
|
1.0
|
CA
|
A:ASP92
|
4.6
|
29.8
|
1.0
|
CA
|
A:ASP94
|
4.6
|
19.9
|
1.0
|
N
|
A:GLY95
|
4.7
|
17.6
|
1.0
|
N
|
A:GLY93
|
4.7
|
29.8
|
1.0
|
C
|
A:ILE97
|
4.7
|
14.0
|
1.0
|
N
|
A:LYS91
|
4.8
|
22.2
|
1.0
|
C
|
A:ASP92
|
4.8
|
19.6
|
1.0
|
C
|
A:ASP94
|
4.8
|
14.5
|
1.0
|
|
Manganese binding site 2 out
of 3 in 2pal
Go back to
Manganese Binding Sites List in 2pal
Manganese binding site 2 out
of 3 in the Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn111
b:5.3
occ:1.00
|
OD1
|
A:ASP51
|
1.9
|
8.1
|
1.0
|
OD1
|
A:ASP53
|
2.2
|
9.5
|
1.0
|
O
|
A:PHE57
|
2.2
|
8.1
|
1.0
|
OG
|
A:SER55
|
2.3
|
5.7
|
1.0
|
OE2
|
A:GLU62
|
2.4
|
7.1
|
1.0
|
OE1
|
A:GLU59
|
2.4
|
16.4
|
1.0
|
CD
|
A:GLU62
|
3.0
|
12.0
|
1.0
|
OE1
|
A:GLU62
|
3.0
|
12.8
|
1.0
|
CG
|
A:ASP51
|
3.1
|
7.1
|
1.0
|
CG
|
A:ASP53
|
3.2
|
14.4
|
1.0
|
CD
|
A:GLU59
|
3.3
|
22.8
|
1.0
|
C
|
A:PHE57
|
3.4
|
13.0
|
1.0
|
CB
|
A:SER55
|
3.4
|
10.5
|
1.0
|
OE2
|
A:GLU59
|
3.4
|
8.7
|
1.0
|
OD2
|
A:ASP53
|
3.6
|
16.9
|
1.0
|
CB
|
A:ASP51
|
3.8
|
5.3
|
1.0
|
N
|
A:SER55
|
3.9
|
13.0
|
1.0
|
CA
|
A:ASP51
|
3.9
|
4.9
|
1.0
|
OD2
|
A:ASP51
|
4.0
|
12.4
|
1.0
|
N
|
A:ASP53
|
4.2
|
14.0
|
1.0
|
N
|
A:GLU59
|
4.2
|
4.8
|
1.0
|
O
|
A:HOH266
|
4.2
|
24.3
|
1.0
|
C
|
A:ASP51
|
4.2
|
7.2
|
1.0
|
CA
|
A:SER55
|
4.3
|
6.5
|
1.0
|
N
|
A:PHE57
|
4.3
|
12.8
|
1.0
|
N
|
A:ILE58
|
4.3
|
11.3
|
1.0
|
CA
|
A:ILE58
|
4.4
|
12.5
|
1.0
|
CG
|
A:GLU62
|
4.4
|
13.3
|
1.0
|
CB
|
A:ASP53
|
4.4
|
16.8
|
1.0
|
CA
|
A:PHE57
|
4.5
|
12.8
|
1.0
|
N
|
A:LYS54
|
4.5
|
13.0
|
1.0
|
CA
|
A:ASP53
|
4.5
|
15.9
|
1.0
|
N
|
A:GLN52
|
4.6
|
5.3
|
1.0
|
C
|
A:ASP53
|
4.6
|
21.0
|
1.0
|
N
|
A:GLY56
|
4.7
|
11.9
|
1.0
|
CG
|
A:GLU59
|
4.7
|
12.0
|
1.0
|
O
|
A:ASP51
|
4.7
|
10.9
|
1.0
|
C
|
A:SER55
|
4.8
|
14.4
|
1.0
|
C
|
A:ILE58
|
4.9
|
7.2
|
1.0
|
CB
|
A:GLU59
|
4.9
|
5.5
|
1.0
|
C
|
A:LYS54
|
5.0
|
16.4
|
1.0
|
O
|
A:HOH219
|
5.0
|
42.0
|
1.0
|
|
Manganese binding site 3 out
of 3 in 2pal
Go back to
Manganese Binding Sites List in 2pal
Manganese binding site 3 out
of 3 in the Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn223
b:28.8
occ:0.50
|
O
|
A:HOH256
|
2.1
|
25.6
|
1.0
|
O
|
A:HOH266
|
2.1
|
24.3
|
1.0
|
OD2
|
A:ASP53
|
3.0
|
16.9
|
1.0
|
OD2
|
A:ASP61
|
3.4
|
27.5
|
1.0
|
OD1
|
A:ASP61
|
3.5
|
17.1
|
1.0
|
CG
|
A:ASP61
|
3.9
|
29.7
|
1.0
|
CG
|
A:ASP53
|
4.0
|
14.4
|
1.0
|
CB
|
A:ASP53
|
4.4
|
16.8
|
1.0
|
OE1
|
A:GLU62
|
4.5
|
12.8
|
1.0
|
O
|
A:HOH224
|
4.6
|
30.3
|
1.0
|
OE1
|
A:GLU59
|
4.7
|
16.4
|
1.0
|
O
|
A:HOH219
|
4.8
|
42.0
|
1.0
|
CD
|
A:GLU62
|
4.9
|
12.0
|
1.0
|
OD1
|
A:ASP53
|
4.9
|
9.5
|
1.0
|
CG
|
A:GLU62
|
4.9
|
13.3
|
1.0
|
O
|
A:HOH264
|
5.0
|
26.2
|
1.0
|
|
Reference:
J.P.Declercq,
B.Tinant,
J.Parello,
J.Rambaud.
Ionic Interactions with Parvalbumins. Crystal Structure Determination of Pike 4.10 Parvalbumin in Four Different Ionic Environments. J.Mol.Biol. V. 220 1017 1991.
ISSN: ISSN 0022-2836
PubMed: 1880797
DOI: 10.1016/0022-2836(91)90369-H
Page generated: Sat Oct 5 14:53:55 2024
|