Manganese in PDB 2p7q: Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid

The structure of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid, PDB code: 2p7q was solved by K.L.Fillgrove, S.Pakhomova, M.Schaab, M.E.Newcomer, R.N.Armstrong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.09 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	169.011, 69.447, 83.971, 90.00, 113.86, 90.00
R / Rfree (%)	21.1 / 27

The binding sites of Manganese atom in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid (pdb code 2p7q). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid, PDB code: 2p7q:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn2001 b:34.8 occ:1.00 O1 A:GG62002 2.1 30.0 1.0 O5 A:GG62002 2.2 46.5 1.0 NE2 A:HIS69 2.4 35.5 1.0 NE2 B:HIS7 2.4 25.6 1.0 OE1 A:GLU118 2.4 30.7 1.0 OH A:TYR108 2.7 41.8 1.0 C2 A:GG62002 3.1 49.3 1.0 P A:GG62002 3.2 18.3 1.0 CE1 B:HIS7 3.2 21.0 1.0 CD2 A:HIS69 3.3 35.0 1.0 CD A:GLU118 3.3 36.9 1.0 CE1 A:HIS69 3.3 33.2 1.0 O3 A:GG62002 3.4 33.0 1.0 CD2 B:HIS7 3.4 24.9 1.0 OE2 A:GLU118 3.5 25.3 1.0 C1 A:GG62002 3.6 32.6 1.0 OG1 B:THR9 3.9 33.9 1.0 CZ A:TYR108 3.9 30.8 1.0 O2 A:GG62002 4.2 48.3 1.0 ND1 B:HIS7 4.4 28.3 1.0 CE2 A:TYR108 4.4 37.8 1.0 O4 A:GG62002 4.4 39.3 1.0 OH A:TYR67 4.4 39.2 1.0 ND1 A:HIS69 4.5 33.3 1.0 CG A:HIS69 4.5 34.9 1.0 C3 A:GG62002 4.5 40.0 1.0 CG B:HIS7 4.5 20.1 1.0 CB A:ALA71 4.5 29.9 1.0 CG A:GLU118 4.7 27.0 1.0 CB B:THR9 4.8 32.6 1.0 CE1 A:TYR108 4.9 26.4 1.0

Manganese binding site 2 out of 6 in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn1001 b:38.0 occ:1.00 O1 B:GG61002 1.9 29.8 1.0 O5 B:GG61002 2.3 37.6 1.0 NE2 A:HIS7 2.3 33.5 1.0 NE2 B:HIS69 2.4 33.8 1.0 OE1 B:GLU118 2.4 36.6 1.0 OH B:TYR108 2.9 57.4 1.0 C2 B:GG61002 3.1 45.4 1.0 CD2 B:HIS69 3.2 40.6 1.0 CE1 A:HIS7 3.3 34.7 1.0 P B:GG61002 3.3 29.6 1.0 CD2 A:HIS7 3.3 32.4 1.0 CD B:GLU118 3.4 45.7 1.0 CE1 B:HIS69 3.4 28.8 1.0 C1 B:GG61002 3.5 47.3 1.0 OG1 A:THR9 3.6 34.8 1.0 O2 B:GG61002 3.8 55.2 1.0 OE2 B:GLU118 3.8 44.1 1.0 O3 B:GG61002 3.8 40.5 1.0 CZ B:TYR108 3.9 60.4 1.0 CE2 B:TYR108 4.2 59.0 1.0 C3 B:GG61002 4.3 41.3 1.0 ND1 A:HIS7 4.4 36.8 1.0 CG B:HIS69 4.4 37.2 1.0 CG A:HIS7 4.4 32.9 1.0 ND1 B:HIS69 4.5 38.1 1.0 O4 B:GG61002 4.5 52.0 1.0 CB A:THR9 4.6 39.2 1.0 CB B:ALA71 4.6 26.8 1.0 CG B:GLU118 4.7 40.8 1.0 CB B:GLU118 4.9 38.3 1.0 CE1 B:TYR108 4.9 56.8 1.0

Manganese binding site 3 out of 6 in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn4001 b:41.2 occ:1.00 O5 C:GG64002 2.0 31.9 1.0 OE1 C:GLU118 2.0 34.8 1.0 O1 C:GG64002 2.2 44.3 1.0 NE2 C:HIS69 2.3 30.8 1.0 NE2 D:HIS7 2.4 21.8 1.0 OH C:TYR108 2.8 32.3 1.0 CD C:GLU118 3.1 38.6 1.0 CD2 C:HIS69 3.2 28.2 1.0 P C:GG64002 3.3 20.7 1.0 CE1 D:HIS7 3.3 21.9 1.0 CE1 C:HIS69 3.3 38.5 1.0 C2 C:GG64002 3.4 46.2 1.0 CD2 D:HIS7 3.5 28.0 1.0 OE2 C:GLU118 3.5 36.5 1.0 C1 C:GG64002 3.6 35.0 1.0 O2 C:GG64002 3.7 51.3 1.0 CZ C:TYR108 3.9 23.7 1.0 OG1 D:THR9 3.9 34.8 1.0 O3 C:GG64002 4.0 33.6 1.0 CE2 C:TYR108 4.3 30.1 1.0 O4 C:GG64002 4.3 32.7 1.0 CG C:GLU118 4.4 35.5 1.0 ND1 C:HIS69 4.4 32.6 1.0 CG C:HIS69 4.4 33.1 1.0 ND1 D:HIS7 4.5 26.2 1.0 CB C:ALA71 4.5 23.6 1.0 C3 C:GG64002 4.6 40.3 1.0 CG D:HIS7 4.6 19.3 1.0 CB C:GLU118 4.6 33.9 1.0 CB D:THR9 4.8 33.2 1.0

Manganese binding site 4 out of 6 in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn3001 b:31.0 occ:1.00 O5 D:GG63002 1.9 30.0 1.0 OE1 D:GLU118 2.1 21.9 1.0 O1 D:GG63002 2.2 27.1 1.0 NE2 C:HIS7 2.3 25.7 1.0 NE2 D:HIS69 2.5 23.1 1.0 OH D:TYR108 2.9 24.4 1.0 CE1 C:HIS7 3.0 22.2 1.0 CD D:GLU118 3.0 32.3 1.0 P D:GG63002 3.2 9.2 1.0 OE2 D:GLU118 3.3 36.2 1.0 CD2 D:HIS69 3.4 28.0 1.0 C2 D:GG63002 3.4 27.1 1.0 CD2 C:HIS7 3.4 25.6 1.0 CE1 D:HIS69 3.5 33.5 1.0 C1 D:GG63002 3.6 25.6 1.0 O2 D:GG63002 3.7 52.9 1.0 OG1 C:THR9 3.8 33.6 1.0 CZ D:TYR108 3.9 19.1 1.0 O3 D:GG63002 3.9 29.3 1.0 ND1 C:HIS7 4.3 26.4 1.0 O4 D:GG63002 4.3 22.0 1.0 CG D:GLU118 4.4 28.1 1.0 CE2 D:TYR108 4.4 22.0 1.0 CG C:HIS7 4.5 24.2 1.0 CG D:HIS69 4.5 24.4 1.0 ND1 D:HIS69 4.6 28.3 1.0 OH D:TYR67 4.6 21.3 1.0 C3 D:GG63002 4.6 32.9 1.0 CB D:ALA71 4.6 31.4 1.0 CB D:GLU118 4.8 23.4 1.0 CB C:THR9 4.8 27.3 1.0 CE1 D:TYR108 4.9 13.0 1.0

Manganese binding site 5 out of 6 in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn6001 b:32.5 occ:1.00 O5 E:GG66002 2.0 26.0 1.0 OE1 E:GLU118 2.1 26.6 1.0 O1 E:GG66002 2.2 33.5 1.0 NE2 E:HIS69 2.2 23.5 1.0 NE2 F:HIS7 2.4 34.6 1.0 OH E:TYR108 2.8 28.4 1.0 CE1 E:HIS69 3.0 28.4 1.0 CD E:GLU118 3.0 34.8 1.0 CE1 F:HIS7 3.1 28.9 1.0 P E:GG66002 3.2 8.6 1.0 C2 E:GG66002 3.3 42.0 1.0 OE2 E:GLU118 3.3 19.0 1.0 CD2 E:HIS69 3.3 33.1 1.0 CD2 F:HIS7 3.5 24.6 1.0 C1 E:GG66002 3.7 28.4 1.0 O3 E:GG66002 3.7 32.9 1.0 OG1 F:THR9 3.9 30.8 1.0 CZ E:TYR108 3.9 27.3 1.0 O2 E:GG66002 4.1 50.6 1.0 ND1 E:HIS69 4.2 31.0 1.0 ND1 F:HIS7 4.3 26.4 1.0 O4 E:GG66002 4.4 28.2 1.0 CG E:HIS69 4.4 32.1 1.0 CE2 E:TYR108 4.4 21.8 1.0 CG E:GLU118 4.4 32.4 1.0 CG F:HIS7 4.6 25.3 1.0 OH E:TYR67 4.6 22.2 1.0 C3 E:GG66002 4.6 38.3 1.0 CB E:ALA71 4.6 24.2 1.0 CB F:THR9 4.7 27.1 1.0 CB E:GLU118 4.8 28.2 1.0

Manganese binding site 6 out of 6 in the Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Crystal Structure of E126Q Mutant of Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes Complexed with Mn(II) and 1S,2S-Dihydroxypropylphosphonic Acid within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn5001 b:48.5 occ:1.00 O1 F:GG65002 2.1 56.7 1.0 O5 F:GG65002 2.1 36.0 1.0 NE2 E:HIS7 2.2 25.8 1.0 OE1 F:GLU118 2.3 45.2 1.0 NE2 F:HIS69 2.4 30.8 1.0 CE1 E:HIS7 2.8 26.5 1.0 OH F:TYR108 3.1 65.0 1.0 CD2 F:HIS69 3.2 25.5 1.0 CD F:GLU118 3.2 42.7 1.0 C2 F:GG65002 3.3 50.3 1.0 P F:GG65002 3.3 15.5 1.0 CD2 E:HIS7 3.4 29.6 1.0 OE2 F:GLU118 3.5 47.3 1.0 CE1 F:HIS69 3.5 39.6 1.0 C1 F:GG65002 3.7 41.8 1.0 O3 F:GG65002 3.8 28.2 1.0 OG1 E:THR9 3.9 22.7 1.0 ND1 E:HIS7 4.0 33.6 1.0 O2 F:GG65002 4.0 47.5 1.0 CZ F:TYR108 4.1 68.4 1.0 CG E:HIS7 4.4 29.4 1.0 CE2 F:TYR108 4.4 68.2 1.0 CG F:HIS69 4.5 35.9 1.0 CB F:ALA71 4.5 29.1 1.0 O4 F:GG65002 4.5 23.3 1.0 CG F:GLU118 4.6 42.6 1.0 C3 F:GG65002 4.6 56.3 1.0 OH F:TYR67 4.6 47.0 1.0 ND1 F:HIS69 4.6 26.6 1.0 CB E:THR9 4.7 23.3 1.0 CB F:GLU118 4.8 37.4 1.0

K.L.Fillgrove, S.Pakhomova, M.R.Schaab, M.E.Newcomer, R.N.Armstrong. Structure and Mechanism of the Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes. Biochemistry V. 46 8110 2007.
ISSN: ISSN 0006-2960
PubMed: 17567049
DOI: 10.1021/BI700625P