Manganese in PDB 2p72: Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1

The structure of Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1, PDB code: 2p72 was solved by Y.Zhang, Y.Xiang, J.L.Van Etten, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	126.448, 61.776, 76.091, 90.00, 126.56, 90.00
R / Rfree (%)	20.7 / 23.3

The binding sites of Manganese atom in the Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1 (pdb code 2p72). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1, PDB code: 2p72:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn214 b:56.8 occ:1.00 O A:HOH284 2.0 55.8 1.0 O A:HOH283 2.1 60.8 1.0 NE2 A:HIS193 2.3 41.4 1.0 OD2 A:ASP80 2.3 47.1 1.0 OD2 A:ASP78 2.4 36.8 1.0 OD1 A:ASP80 2.9 45.7 1.0 CG A:ASP80 3.0 43.1 1.0 CE1 A:HIS193 3.2 42.2 1.0 CG A:ASP78 3.2 39.9 1.0 CD2 A:HIS193 3.2 39.8 1.0 CB A:ASP78 3.3 40.2 1.0 O A:HOH243 3.9 42.4 1.0 O A:HOH226 4.1 41.5 1.0 ND1 A:HIS193 4.3 38.5 1.0 OD1 A:ASP78 4.4 39.6 1.0 CG A:HIS193 4.4 40.9 1.0 CB A:ASP80 4.5 43.3 1.0 CB A:CYS195 4.7 51.3 1.0 CA A:ASP78 4.8 40.2 1.0 CA A:GLY121 4.9 39.6 1.0 CA A:CYS195 4.9 51.7 1.0 NH2 A:ARG202 4.9 61.0 1.0 CG2 A:VAL81 5.0 44.0 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of A Glycosyltransferase Involved in the Glycosylation of the Major Capsid of Pbcv-1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn214 b:38.6 occ:1.00 O B:HOH283 2.0 56.9 1.0 O1A B:UPG215 2.0 39.5 1.0 OD2 B:ASP78 2.2 44.7 1.0 NE2 B:HIS193 2.3 44.0 1.0 OD2 B:ASP80 2.3 44.8 1.0 O B:HOH225 2.4 62.1 1.0 CG B:ASP78 3.1 43.8 1.0 CG B:ASP80 3.1 44.1 1.0 OD1 B:ASP80 3.2 48.5 1.0 CE1 B:HIS193 3.2 45.0 1.0 CD2 B:HIS193 3.4 43.4 1.0 CB B:ASP78 3.4 43.1 1.0 PA B:UPG215 3.5 42.7 1.0 O2A B:UPG215 4.1 44.6 1.0 OD1 B:ASP78 4.2 41.6 1.0 O1B B:UPG215 4.2 39.9 1.0 O3A B:UPG215 4.4 47.3 1.0 ND1 B:HIS193 4.4 41.7 1.0 O B:HOH281 4.4 38.3 1.0 O3B B:UPG215 4.4 48.0 1.0 CG B:HIS193 4.5 42.9 1.0 C5C B:UPG215 4.5 41.5 1.0 O5C B:UPG215 4.5 43.1 1.0 CB B:ASP80 4.6 42.4 1.0 PB B:UPG215 4.6 47.7 1.0 CA B:CYS195 4.8 53.0 1.0 CB B:CYS195 4.8 52.3 1.0 CA B:GLY121 4.8 40.8 1.0 CA B:ASP78 5.0 43.1 1.0

Y.Zhang, Y.Xiang, J.L.Van Etten, M.G.Rossmann. Structure and Function of A Chlorella Virus-Encoded Glycosyltransferase. Structure V. 15 1031 2007.
ISSN: ISSN 0969-2126
PubMed: 17850743
DOI: 10.1016/J.STR.2007.07.006