Manganese in PDB 2p0n: NMB1532 Protein From Neisseria Meningitidis, Unknown Function

The structure of NMB1532 Protein From Neisseria Meningitidis, Unknown Function, PDB code: 2p0n was solved by J.Osipiuk, H.Li, M.Bargassa, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.65 / 1.41
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	103.579, 59.558, 59.706, 90.00, 110.32, 90.00
R / Rfree (%)	16.8 / 20.3

The structure of NMB1532 Protein From Neisseria Meningitidis, Unknown Function also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Manganese atom in the NMB1532 Protein From Neisseria Meningitidis, Unknown Function (pdb code 2p0n). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the NMB1532 Protein From Neisseria Meningitidis, Unknown Function, PDB code: 2p0n:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the NMB1532 Protein From Neisseria Meningitidis, Unknown Function


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of NMB1532 Protein From Neisseria Meningitidis, Unknown Function within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn604 b:11.5 occ:1.00 OE2 A:GLU70 2.0 11.5 1.0 NE2 A:HIS22 2.2 11.1 1.0 OE1 A:GLU140 2.2 11.0 1.0 NE2 A:HIS66 2.2 10.6 1.0 CL A:CL608 2.4 12.1 1.0 CD A:GLU70 3.0 10.2 1.0 CE1 A:HIS66 3.1 11.9 1.0 CE1 A:HIS22 3.1 11.1 1.0 CD A:GLU140 3.2 9.5 1.0 CD2 A:HIS22 3.2 12.2 1.0 CD2 A:HIS66 3.2 11.3 1.0 MN A:MN605 3.3 10.5 1.0 OE1 A:GLU70 3.3 10.9 1.0 OE2 A:GLU140 3.6 10.2 1.0 CZ A:PHE144 4.0 10.8 1.0 ND1 A:HIS66 4.3 12.1 1.0 ND1 A:HIS22 4.3 11.7 1.0 CG A:HIS22 4.3 10.9 1.0 CG A:GLU70 4.3 9.9 1.0 CG A:HIS66 4.3 11.3 1.0 CD2 A:LEU137 4.3 14.8 1.0 CG A:GLU140 4.4 9.6 1.0 NE2 A:HIS136 4.7 8.9 1.0 CE2 A:PHE144 4.7 12.0 1.0 CD2 A:HIS136 4.8 9.3 1.0

Manganese binding site 2 out of 4 in the NMB1532 Protein From Neisseria Meningitidis, Unknown Function


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of NMB1532 Protein From Neisseria Meningitidis, Unknown Function within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn605 b:10.5 occ:1.00 OE2 A:GLU140 2.1 10.2 1.0 OE1 A:GLU70 2.2 10.9 1.0 NE2 A:HIS96 2.2 10.6 1.0 NE2 A:HIS136 2.2 8.9 1.0 CL A:CL608 2.5 12.1 1.0 CD A:GLU140 3.0 9.5 1.0 CD A:GLU70 3.1 10.2 1.0 OE1 A:GLU140 3.1 11.0 1.0 CE1 A:HIS96 3.1 10.6 1.0 CD2 A:HIS96 3.2 11.8 1.0 CE1 A:HIS136 3.2 9.1 1.0 CD2 A:HIS136 3.2 9.3 1.0 MN A:MN604 3.3 11.5 1.0 OE2 A:GLU70 3.4 11.5 1.0 ND1 A:HIS96 4.3 11.5 1.0 ND1 A:HIS67 4.3 16.8 1.0 CG A:HIS96 4.3 10.3 1.0 ND1 A:HIS136 4.3 8.7 1.0 CG A:GLU140 4.4 9.6 1.0 CG A:HIS136 4.4 8.7 1.0 CG A:GLU70 4.5 9.9 1.0 CZ A:PHE75 4.5 10.2 1.0 CE1 A:HIS67 4.6 18.2 1.0 CB A:GLU70 4.8 10.4 1.0 NE2 A:HIS66 4.8 10.6 1.0 CE2 A:PHE75 4.9 10.6 1.0 CD1 A:LEU99 5.0 14.0 1.0 CB A:GLU140 5.0 8.2 1.0

Manganese binding site 3 out of 4 in the NMB1532 Protein From Neisseria Meningitidis, Unknown Function


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of NMB1532 Protein From Neisseria Meningitidis, Unknown Function within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn606 b:11.2 occ:1.00 OE2 B:GLU140 2.1 10.1 1.0 NE2 B:HIS96 2.2 11.2 1.0 OE1 B:GLU70 2.2 11.3 1.0 NE2 B:HIS136 2.3 8.8 1.0 CL B:CL609 2.5 12.5 1.0 CD B:GLU140 2.9 11.2 1.0 CD B:GLU70 3.1 11.6 1.0 OE1 B:GLU140 3.1 11.6 1.0 CE1 B:HIS96 3.1 11.3 1.0 CD2 B:HIS96 3.2 12.2 1.0 CD2 B:HIS136 3.2 7.6 1.0 CE1 B:HIS136 3.3 9.1 1.0 MN B:MN607 3.3 12.0 1.0 OE2 B:GLU70 3.4 11.3 1.0 ND1 B:HIS96 4.3 10.8 1.0 CG B:GLU140 4.3 9.2 1.0 CD2 B:HIS67 4.3 14.1 1.0 CG B:HIS96 4.3 11.1 1.0 ND1 B:HIS136 4.4 9.3 1.0 CG B:HIS136 4.4 8.1 1.0 CG B:GLU70 4.5 10.4 1.0 CZ B:PHE75 4.6 11.5 1.0 NE2 B:HIS67 4.8 14.8 1.0 CB B:GLU70 4.8 10.6 1.0 NE2 B:HIS66 4.9 10.8 1.0 CB B:GLU140 5.0 8.5 1.0

Manganese binding site 4 out of 4 in the NMB1532 Protein From Neisseria Meningitidis, Unknown Function


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of NMB1532 Protein From Neisseria Meningitidis, Unknown Function within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn607 b:12.0 occ:1.00 OE2 B:GLU70 2.1 11.3 1.0 OE1 B:GLU140 2.1 11.6 1.0 NE2 B:HIS22 2.2 12.8 1.0 NE2 B:HIS66 2.2 10.8 1.0 CL B:CL609 2.4 12.5 1.0 CD B:GLU70 3.0 11.6 1.0 CD B:GLU140 3.1 11.2 1.0 CD2 B:HIS22 3.1 12.7 1.0 CE1 B:HIS66 3.2 12.9 1.0 CE1 B:HIS22 3.2 11.2 1.0 CD2 B:HIS66 3.2 11.0 1.0 MN B:MN606 3.3 11.2 1.0 OE1 B:GLU70 3.4 11.3 1.0 OE2 B:GLU140 3.6 10.1 1.0 CZ B:PHE144 4.0 11.8 1.0 CG B:GLU140 4.3 9.2 1.0 ND1 B:HIS22 4.3 12.0 1.0 ND1 B:HIS66 4.3 13.2 1.0 CG B:HIS22 4.3 11.8 1.0 CG B:HIS66 4.3 10.2 1.0 CD2 B:LEU137 4.4 16.5 1.0 CG B:GLU70 4.4 10.4 1.0 NE2 B:HIS136 4.7 8.8 1.0 CE2 B:PHE144 4.8 13.3 1.0 CD2 B:HIS136 4.8 7.6 1.0 CE1 B:PHE144 5.0 11.2 1.0

J.Osipiuk, H.Li, M.Bargassa, A.Joachimiak. X-Ray Crystal Structure of NMB1532 Protein of Unknown Function From Neisseria Meningitidis. To Be Published.