Manganese in PDB 2o1e: Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583

The structure of Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583, PDB code: 2o1e was solved by F.Forouhar, W.Zhou, J.Seetharaman, C.X.Chen, Y.Fang, K.Cunningham, L.-C.Ma, H.Janjua, R.Xiao, M.C.Baran, J.Liu, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeaststructural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.93 / 2.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	45.292, 54.344, 62.840, 103.70, 100.46, 96.75
R / Rfree (%)	22.3 / 29

The binding sites of Manganese atom in the Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583 (pdb code 2o1e). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583, PDB code: 2o1e:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:31.6 occ:1.00 NE2 A:HIS51 2.1 64.4 1.0 NE2 A:HIS128 2.1 41.2 1.0 OE2 A:GLU267 2.2 34.3 1.0 O A:HOH411 2.5 16.1 1.0 CD2 A:HIS51 2.8 63.9 1.0 CD A:GLU267 2.9 37.5 1.0 OE1 A:GLU267 2.9 38.3 1.0 CD2 A:HIS128 3.0 41.7 1.0 CE1 A:HIS128 3.1 39.8 1.0 CE1 A:HIS51 3.3 64.5 1.0 CG A:HIS51 4.1 63.1 1.0 CG A:HIS128 4.2 41.0 1.0 ND1 A:HIS128 4.2 42.1 1.0 ND1 A:HIS51 4.2 64.0 1.0 CG A:GLU267 4.3 41.1 1.0 CB A:ALA194 4.3 48.8 1.0 O A:HOH412 4.7 44.8 1.0 CH2 A:TRP130 4.9 36.3 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn401 b:50.1 occ:1.00 NE2 B:HIS128 2.1 38.0 1.0 NE2 B:HIS51 2.3 63.8 1.0 OE2 B:GLU267 2.4 56.9 1.0 CD2 B:HIS128 2.9 38.5 1.0 O B:HOH423 3.0 24.7 1.0 CD2 B:HIS51 3.0 63.0 1.0 CD B:GLU267 3.2 56.4 1.0 CE1 B:HIS128 3.2 39.4 1.0 OE1 B:GLU267 3.3 57.8 1.0 CE1 B:HIS51 3.4 64.6 1.0 CG B:HIS128 4.1 39.0 1.0 CG B:HIS51 4.2 62.4 1.0 ND1 B:HIS128 4.2 39.3 1.0 ND1 B:HIS51 4.4 63.8 1.0 CG B:GLU267 4.6 55.9 1.0 CB B:ALA194 4.6 53.2 1.0 CH2 B:TRP130 4.6 36.4 1.0 O B:HOH405 4.7 34.1 1.0 CE B:MSE76 4.9 66.6 1.0

F.Forouhar, W.Zhou, J.Seetharaman, C.X.Chen, Y.Fang, K.Cunningham, L.-C.Ma, H.Janjua, R.Xiao, M.C.Baran, J.Liu, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of the Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target SR583 To Be Published.