Manganese in PDB 2ky8: Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence

The binding sites of Manganese atom in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence (pdb code 2ky8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 6 binding sites of Manganese where determined in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence, PDB code: 2ky8:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6;

Manganese binding site 1 out of 6 in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn301 b:0.0 occ:1.00 MN C:MN301 0.0 0.0 1.0 HY1A C:TED119 0.6 0.0 0.3 CY1 C:TED119 1.2 0.0 0.3 OY4 C:TED119 1.3 0.0 0.3 CY8 C:TED119 1.5 0.0 0.3 HY1 C:TED119 1.7 0.0 0.3 HYA C:TED119 1.8 0.0 0.3 NYA C:TED119 1.9 0.0 0.3 OY8 C:TED119 1.9 0.0 0.3 HY4A C:TED119 1.9 0.0 0.3 CYA C:TED119 2.2 0.0 0.3 OY4 C:TED119 2.2 0.0 0.3 OY1 C:TED119 2.2 0.0 0.3 OY2 C:TED119 2.2 0.0 0.3 CY4 C:TED119 2.3 0.0 0.3 HY1A C:TED119 2.3 0.0 0.3 OY3 C:TED119 2.3 0.0 0.3 NYB C:TED119 2.4 0.0 0.3 NYA C:TED119 2.4 0.0 0.3 CY5 C:TED119 2.5 0.0 0.3 CY4 C:TED119 2.7 0.0 0.3 HYAA C:TED119 2.9 0.0 0.3 CY8 C:TED119 3.0 0.0 0.3 HN13 C:TED119 3.0 0.0 0.3 CY4 C:TED119 3.0 0.0 0.3 CY1 C:TED119 3.1 0.0 0.3 CY6 C:TED119 3.1 0.0 0.3 CY7 C:TED119 3.1 0.0 0.3 CY5 C:TED119 3.1 0.0 0.3 NYA C:TED119 3.1 0.0 0.3 CY3 C:TED119 3.1 0.0 0.3 HY4 C:TED119 3.1 0.0 0.3 N13 C:TED119 3.1 0.0 0.3 MN C:MN301 3.2 0.0 1.0 HY4A C:TED119 3.2 0.0 0.3 CY2 C:TED119 3.2 0.0 0.3 CY8 C:TED119 3.2 0.0 0.3 HY4 C:TED119 3.2 0.0 0.3 CY1 C:TED119 3.2 0.0 0.3 HY3A C:TED119 3.4 0.0 0.3 CYB C:TED119 3.4 0.0 0.3 CYB C:TED119 3.4 0.0 0.3 CYA C:TED119 3.4 0.0 0.3 OY1 C:TED119 3.5 0.0 0.3 HYB C:TED119 3.5 0.0 0.3 HY4 C:TED119 3.6 0.0 0.3 OY1 C:TED119 3.6 0.0 0.3 HY2 C:TED119 3.6 0.0 0.3 CY5 C:TED119 3.7 0.0 0.3 OY3 C:TED119 3.7 0.0 0.3 HY1 C:TED119 3.7 0.0 0.3 HYBA C:TED119 3.7 0.0 0.3 OY8 C:TED119 3.8 0.0 0.3 HY1 C:TED119 4.0 0.0 0.3 OY4 C:TED119 4.0 0.0 0.3 HYA C:TED119 4.0 0.0 0.3 HY4A C:TED119 4.1 0.0 0.3 MN C:MN301 4.1 0.0 1.0 OY8 C:TED119 4.1 0.0 0.3 HY3 C:TED119 4.1 0.0 0.3 HY2A C:TED119 4.2 0.0 0.3 HY1A C:TED119 4.2 0.0 0.3 HYBA C:TED119 4.2 0.0 0.3 NYB C:TED119 4.2 0.0 0.3 OY6 C:TED119 4.2 0.0 0.3 OY7 C:TED119 4.2 0.0 0.3 HYAA C:TED119 4.2 0.0 0.3 HYB C:TED119 4.3 0.0 0.3 N13 C:TED119 4.3 0.0 0.3 H11A C:TED119 4.4 0.0 0.3 CYA C:TED119 4.5 0.0 0.3 C12 C:TED119 4.6 0.0 0.3 H11 C:TED119 4.7 0.0 0.3 HY3A C:TED119 4.7 0.0 0.3 H12 C:TED119 4.7 0.0 0.3 H11 C:TED119 4.7 0.0 0.3 H11 C:TED119 4.8 0.0 0.3 N13 C:TED119 4.8 0.0 0.3 CY7 C:TED119 4.9 0.0 0.3 HYAA C:TED119 4.9 0.0 0.3 C11 C:TED119 4.9 0.0 0.3 C12 C:TED119 4.9 0.0 0.3 NYB C:TED119 5.0 0.0 0.3

Manganese binding site 2 out of 6 in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn301 b:0.0 occ:1.00 MN C:MN301 0.0 0.0 1.0 HY1 C:TED119 1.5 0.0 0.3 HY4A C:TED119 1.9 0.0 0.3 CY1 C:TED119 2.2 0.0 0.3 HY2 C:TED119 2.2 0.0 0.3 OY2 C:TED119 2.2 0.0 0.3 OY1 C:TED119 2.2 0.0 0.3 OY4 C:TED119 2.3 0.0 0.3 OY3 C:TED119 2.3 0.0 0.3 NYB C:TED119 2.4 0.0 0.3 NYA C:TED119 2.4 0.0 0.3 CY5 C:TED119 2.5 0.0 0.3 HYA C:TED119 2.6 0.0 0.3 OY1 C:TED119 2.6 0.0 0.3 NYA C:TED119 2.6 0.0 0.3 OY2 C:TED119 2.8 0.0 0.3 CY2 C:TED119 2.8 0.0 0.3 CY6 C:TED119 2.8 0.0 0.3 CY4 C:TED119 2.9 0.0 0.3 CYA C:TED119 3.0 0.0 0.3 CY5 C:TED119 3.1 0.0 0.3 CY7 C:TED119 3.1 0.0 0.3 CY6 C:TED119 3.1 0.0 0.3 CY8 C:TED119 3.1 0.0 0.3 CY3 C:TED119 3.1 0.0 0.3 MN C:MN301 3.2 0.0 1.0 HY1A C:TED119 3.2 0.0 0.3 CY4 C:TED119 3.2 0.0 0.3 CY1 C:TED119 3.2 0.0 0.3 NYB C:TED119 3.2 0.0 0.3 HY4 C:TED119 3.2 0.0 0.3 CY2 C:TED119 3.2 0.0 0.3 HY1A C:TED119 3.2 0.0 0.3 OY8 C:TED119 3.3 0.0 0.3 HY3 C:TED119 3.4 0.0 0.3 CYA C:TED119 3.4 0.0 0.3 CYB C:TED119 3.4 0.0 0.3 HY4 C:TED119 3.5 0.0 0.3 N13 C:TED119 3.5 0.0 0.3 HY1A C:TED119 3.5 0.0 0.3 CY8 C:TED119 3.6 0.0 0.3 HY2 C:TED119 3.6 0.0 0.3 OY6 C:TED119 3.6 0.0 0.3 CYB C:TED119 3.6 0.0 0.3 HYA C:TED119 3.7 0.0 0.3 HY2A C:TED119 3.8 0.0 0.3 HYBA C:TED119 3.9 0.0 0.3 HN13 C:TED119 3.9 0.0 0.3 HYAA C:TED119 3.9 0.0 0.3 NYA C:TED119 4.0 0.0 0.3 HYA C:TED119 4.0 0.0 0.3 HYB C:TED119 4.0 0.0 0.3 HYAA C:TED119 4.0 0.0 0.3 CY4 C:TED119 4.0 0.0 0.3 CY1 C:TED119 4.0 0.0 0.3 HY3A C:TED119 4.1 0.0 0.3 HY2A C:TED119 4.2 0.0 0.3 HY4A C:TED119 4.2 0.0 0.3 HY1 C:TED119 4.2 0.0 0.3 CYA C:TED119 4.2 0.0 0.3 H12 C:TED119 4.2 0.0 0.3 OY6 C:TED119 4.2 0.0 0.3 OY7 C:TED119 4.2 0.0 0.3 OY8 C:TED119 4.3 0.0 0.3 HYB C:TED119 4.3 0.0 0.3 HYAA C:TED119 4.3 0.0 0.3 N13 C:TED119 4.3 0.0 0.3 OY4 C:TED119 4.5 0.0 0.3 C12 C:TED119 4.5 0.0 0.3 HY4A C:TED119 4.5 0.0 0.3 CY8 C:TED119 4.5 0.0 0.3 H11A C:TED119 4.5 0.0 0.3 CY3 C:TED119 4.6 0.0 0.3 HYBA C:TED119 4.6 0.0 0.3 H12 C:TED119 4.7 0.0 0.3 OY3 C:TED119 4.7 0.0 0.3 HY4 C:TED119 4.7 0.0 0.3 HN13 C:TED119 4.7 0.0 0.3 CY5 C:TED119 4.8 0.0 0.3 OY4 C:TED119 4.8 0.0 0.3 H11 C:TED119 4.9 0.0 0.3 HY1 C:TED119 4.9 0.0 0.3 C12 C:TED119 4.9 0.0 0.3 CY7 C:TED119 5.0 0.0 0.3

Manganese binding site 3 out of 6 in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn301 b:0.0 occ:1.00 MN C:MN301 0.0 0.0 1.0 HY4 C:TED119 1.5 0.0 0.3 CY4 C:TED119 2.2 0.0 0.3 OY2 C:TED119 2.2 0.0 0.3 OY1 C:TED119 2.2 0.0 0.3 OY3 C:TED119 2.3 0.0 0.3 OY4 C:TED119 2.3 0.0 0.3 CY8 C:TED119 2.3 0.0 0.3 NYB C:TED119 2.4 0.0 0.3 NYA C:TED119 2.4 0.0 0.3 HY4A C:TED119 2.6 0.0 0.3 HY1A C:TED119 2.7 0.0 0.3 HY4A C:TED119 2.7 0.0 0.3 OY8 C:TED119 2.8 0.0 0.3 HY1 C:TED119 2.9 0.0 0.3 OY4 C:TED119 2.9 0.0 0.3 CY6 C:TED119 3.1 0.0 0.3 CY5 C:TED119 3.1 0.0 0.3 CY7 C:TED119 3.1 0.0 0.3 CY8 C:TED119 3.1 0.0 0.3 CY4 C:TED119 3.2 0.0 0.3 CY1 C:TED119 3.2 0.0 0.3 CY3 C:TED119 3.2 0.0 0.3 CY2 C:TED119 3.2 0.0 0.3 CY1 C:TED119 3.3 0.0 0.3 CYB C:TED119 3.4 0.0 0.3 CYA C:TED119 3.4 0.0 0.3 HY4 C:TED119 3.5 0.0 0.3 NYA C:TED119 3.5 0.0 0.3 HY3A C:TED119 3.5 0.0 0.3 HY1 C:TED119 3.5 0.0 0.3 HY2A C:TED119 3.6 0.0 0.3 CY4 C:TED119 3.6 0.0 0.3 HYB C:TED119 3.7 0.0 0.3 HYAA C:TED119 3.8 0.0 0.3 OY8 C:TED119 3.8 0.0 0.3 HYBA C:TED119 3.8 0.0 0.3 HYAA C:TED119 3.9 0.0 0.3 CY8 C:TED119 4.0 0.0 0.3 CYA C:TED119 4.1 0.0 0.3 NYA C:TED119 4.1 0.0 0.3 MN C:MN301 4.1 0.0 1.0 HY1A C:TED119 4.2 0.0 0.3 HY4A C:TED119 4.2 0.0 0.3 HY2 C:TED119 4.2 0.0 0.3 HY3 C:TED119 4.2 0.0 0.3 OY6 C:TED119 4.2 0.0 0.3 OY8 C:TED119 4.2 0.0 0.3 OY7 C:TED119 4.2 0.0 0.3 HYAA C:TED119 4.3 0.0 0.3 HYA C:TED119 4.3 0.0 0.3 HYBA C:TED119 4.3 0.0 0.3 N13 C:TED119 4.4 0.0 0.3 CYB C:TED119 4.4 0.0 0.3 HN13 C:TED119 4.4 0.0 0.3 H11A C:TED119 4.4 0.0 0.3 HY3A C:TED119 4.4 0.0 0.3 HY1A C:TED119 4.5 0.0 0.3 CY5 C:TED119 4.5 0.0 0.3 HY4 C:TED119 4.5 0.0 0.3 CY1 C:TED119 4.5 0.0 0.3 H12 C:TED119 4.6 0.0 0.3 CYA C:TED119 4.7 0.0 0.3 NYB C:TED119 4.7 0.0 0.3 N13 C:TED119 4.9 0.0 0.3 OY4 C:TED119 4.9 0.0 0.3 C12 C:TED119 4.9 0.0 0.3 CY5 C:TED119 4.9 0.0 0.3 OY1 C:TED119 5.0 0.0 0.3 HYA C:TED119 5.0 0.0 0.3

Manganese binding site 4 out of 6 in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn302 b:0.0 occ:1.00 MN B:MN302 0.0 0.0 1.0 HY3A B:TED109 1.5 0.0 0.3 OY3 B:TED109 1.7 0.0 0.3 CY3 B:TED109 1.9 0.0 0.3 CY7 B:TED109 2.0 0.0 0.3 OY2 B:TED109 2.2 0.0 0.3 OY1 B:TED109 2.2 0.0 0.3 HY4 B:TED109 2.3 0.0 0.3 OY4 B:TED109 2.3 0.0 0.3 NYB B:TED109 2.3 0.0 0.3 OY3 B:TED109 2.3 0.0 0.3 OY3 B:TED109 2.3 0.0 0.3 NYA B:TED109 2.4 0.0 0.3 NYB B:TED109 2.5 0.0 0.3 CY7 B:TED109 2.7 0.0 0.3 OY7 B:TED109 2.8 0.0 0.3 CY6 B:TED109 2.8 0.0 0.3 CY2 B:TED109 2.8 0.0 0.3 OY4 B:TED109 2.8 0.0 0.3 HYBA B:TED109 2.9 0.0 0.3 HY3 B:TED109 2.9 0.0 0.3 HY2 B:TED109 2.9 0.0 0.3 CY5 B:TED109 3.0 0.0 0.3 CY8 B:TED109 3.1 0.0 0.3 MN B:MN302 3.1 0.0 1.0 OY7 B:TED109 3.1 0.0 0.3 CY1 B:TED109 3.2 0.0 0.3 CY7 B:TED109 3.2 0.0 0.3 MN B:MN302 3.2 0.0 1.0 CY4 B:TED109 3.2 0.0 0.3 CYB B:TED109 3.2 0.0 0.3 CY4 B:TED109 3.2 0.0 0.3 CY3 B:TED109 3.3 0.0 0.3 CYA B:TED109 3.4 0.0 0.3 CYB B:TED109 3.4 0.0 0.3 HY1A B:TED109 3.4 0.0 0.3 HY4 B:TED109 3.5 0.0 0.3 CY8 B:TED109 3.7 0.0 0.3 CY8 B:TED109 3.7 0.0 0.3 NYA B:TED109 3.7 0.0 0.3 OY4 B:TED109 3.7 0.0 0.3 HYA B:TED109 3.8 0.0 0.3 CY2 B:TED109 3.8 0.0 0.3 HY3A B:TED109 3.9 0.0 0.3 HYBA B:TED109 3.9 0.0 0.3 HY2A B:TED109 3.9 0.0 0.3 HY2A B:TED109 3.9 0.0 0.3 CY3 B:TED109 3.9 0.0 0.3 OY6 B:TED109 3.9 0.0 0.3 CYA B:TED109 4.0 0.0 0.3 HY4A B:TED109 4.1 0.0 0.3 HYB B:TED109 4.1 0.0 0.3 HY3 B:TED109 4.1 0.0 0.3 HY1 B:TED109 4.1 0.0 0.3 HY4A B:TED109 4.2 0.0 0.3 HY3 B:TED109 4.2 0.0 0.3 NYB B:TED109 4.2 0.0 0.3 HYB B:TED109 4.2 0.0 0.3 OY8 B:TED109 4.3 0.0 0.3 HY4 B:TED109 4.3 0.0 0.3 HYAA B:TED109 4.3 0.0 0.3 OY7 B:TED109 4.3 0.0 0.3 N13 B:TED109 4.3 0.0 0.3 HY2 B:TED109 4.3 0.0 0.3 OY8 B:TED109 4.3 0.0 0.3 CY4 B:TED109 4.4 0.0 0.3 HYAA B:TED109 4.5 0.0 0.3 OY2 B:TED109 4.5 0.0 0.3 OY8 B:TED109 4.5 0.0 0.3 NYA B:TED109 4.6 0.0 0.3 H12A B:TED109 4.7 0.0 0.3 HYBA B:TED109 4.7 0.0 0.3 HY3A B:TED109 4.8 0.0 0.3 CY6 B:TED109 4.8 0.0 0.3 C12 B:TED109 4.9 0.0 0.3 OY2 B:TED109 5.0 0.0 0.3 HYA B:TED109 5.0 0.0 0.3 H12 B:TED109 5.0 0.0 0.3 CYB B:TED109 5.0 0.0 0.3

Manganese binding site 5 out of 6 in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn302 b:0.0 occ:1.00 MN B:MN302 0.0 0.0 1.0 HY2 B:TED109 0.6 0.0 0.3 MN B:MN302 0.8 0.0 1.0 CY2 B:TED109 1.5 0.0 0.3 NYA B:TED109 1.6 0.0 0.3 CY6 B:TED109 2.1 0.0 0.3 HY2A B:TED109 2.1 0.0 0.3 NYB B:TED109 2.1 0.0 0.3 OY4 B:TED109 2.1 0.0 0.3 OY1 B:TED109 2.2 0.0 0.3 CY4 B:TED109 2.2 0.0 0.3 OY2 B:TED109 2.2 0.0 0.3 OY1 B:TED109 2.2 0.0 0.3 NYB B:TED109 2.3 0.0 0.3 OY2 B:TED109 2.3 0.0 0.3 OY4 B:TED109 2.3 0.0 0.3 NYA B:TED109 2.4 0.0 0.3 OY3 B:TED109 2.4 0.0 0.3 OY1 B:TED109 2.4 0.0 0.3 HY4 B:TED109 2.4 0.0 0.3 OY2 B:TED109 2.5 0.0 0.3 CY8 B:TED109 2.5 0.0 0.3 CY1 B:TED109 2.6 0.0 0.3 NYB B:TED109 2.6 0.0 0.3 CYA B:TED109 2.6 0.0 0.3 HYA B:TED109 2.7 0.0 0.3 CY6 B:TED109 2.7 0.0 0.3 CY5 B:TED109 2.7 0.0 0.3 H12A B:TED109 2.7 0.0 0.3 CY2 B:TED109 2.8 0.0 0.3 CY6 B:TED109 2.8 0.0 0.3 CY5 B:TED109 2.8 0.0 0.3 CYB B:TED109 2.9 0.0 0.3 OY3 B:TED109 2.9 0.0 0.3 OY6 B:TED109 3.0 0.0 0.3 CY5 B:TED109 3.0 0.0 0.3 CY2 B:TED109 3.0 0.0 0.3 HY2A B:TED109 3.1 0.0 0.3 CY3 B:TED109 3.1 0.0 0.3 CY7 B:TED109 3.1 0.0 0.3 CY8 B:TED109 3.1 0.0 0.3 MN B:MN302 3.1 0.0 1.0 HYA B:TED109 3.2 0.0 0.3 CY4 B:TED109 3.2 0.0 0.3 CYB B:TED109 3.2 0.0 0.3 CY1 B:TED109 3.2 0.0 0.3 CYA B:TED109 3.2 0.0 0.3 HYB B:TED109 3.2 0.0 0.3 CYB B:TED109 3.2 0.0 0.3 HY4A B:TED109 3.2 0.0 0.3 CY3 B:TED109 3.3 0.0 0.3 CYA B:TED109 3.3 0.0 0.3 HY1 B:TED109 3.3 0.0 0.3 N13 B:TED109 3.3 0.0 0.3 HY1A B:TED109 3.3 0.0 0.3 HY3 B:TED109 3.3 0.0 0.3 NYA B:TED109 3.4 0.0 0.3 C12 B:TED109 3.5 0.0 0.3 HYBA B:TED109 3.5 0.0 0.3 HYAA B:TED109 3.5 0.0 0.3 CY7 B:TED109 3.5 0.0 0.3 HY4 B:TED109 3.5 0.0 0.3 HY1A B:TED109 3.5 0.0 0.3 HYBA B:TED109 3.6 0.0 0.3 HY2 B:TED109 3.6 0.0 0.3 HY3A B:TED109 3.6 0.0 0.3 CY1 B:TED109 3.7 0.0 0.3 OY6 B:TED109 3.7 0.0 0.3 HYB B:TED109 3.7 0.0 0.3 OY8 B:TED109 3.7 0.0 0.3 HYA B:TED109 3.7 0.0 0.3 HY2 B:TED109 3.8 0.0 0.3 CY3 B:TED109 3.8 0.0 0.3 OY6 B:TED109 3.8 0.0 0.3 HY3 B:TED109 3.8 0.0 0.3 HY2A B:TED109 3.9 0.0 0.3 N13 B:TED109 4.0 0.0 0.3 HY3A B:TED109 4.0 0.0 0.3 HN13 B:TED109 4.1 0.0 0.3 H12 B:TED109 4.1 0.0 0.3 HY1 B:TED109 4.1 0.0 0.3 HY3 B:TED109 4.1 0.0 0.3 HY4A B:TED109 4.1 0.0 0.3 HY1 B:TED109 4.1 0.0 0.3 HYB B:TED109 4.1 0.0 0.3 HYAA B:TED109 4.2 0.0 0.3 HYBA B:TED109 4.2 0.0 0.3 HYAA B:TED109 4.2 0.0 0.3 OY8 B:TED109 4.2 0.0 0.3 OY7 B:TED109 4.3 0.0 0.3 OY3 B:TED109 4.3 0.0 0.3 N13 B:TED109 4.3 0.0 0.3 CY7 B:TED109 4.4 0.0 0.3 H12 B:TED109 4.4 0.0 0.3 H11 B:TED109 4.5 0.0 0.3 H12 B:TED109 4.5 0.0 0.3 H11A B:TED109 4.5 0.0 0.3 HY1A B:TED109 4.6 0.0 0.3 C11 B:TED109 4.6 0.0 0.3 HY3A B:TED109 4.6 0.0 0.3 HN13 B:TED109 4.6 0.0 0.3 H11A B:TED109 4.7 0.0 0.3 OY7 B:TED109 4.7 0.0 0.3 C12 B:TED109 4.8 0.0 0.3 CY4 B:TED109 4.8 0.0 0.3 C12 B:TED109 4.9 0.0 0.3

Manganese binding site 6 out of 6 in the Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target Methylated Dna Sequence within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn302 b:0.0 occ:1.00 MN B:MN302 0.0 0.0 1.0 MN B:MN302 0.8 0.0 1.0 HY2 B:TED109 1.4 0.0 0.3 OY2 B:TED109 1.6 0.0 0.3 CY6 B:TED109 1.9 0.0 0.3 CY2 B:TED109 1.9 0.0 0.3 OY2 B:TED109 2.0 0.0 0.3 OY2 B:TED109 2.2 0.0 0.3 OY1 B:TED109 2.2 0.0 0.3 OY4 B:TED109 2.2 0.0 0.3 OY1 B:TED109 2.3 0.0 0.3 NYB B:TED109 2.4 0.0 0.3 NYA B:TED109 2.4 0.0 0.3 OY3 B:TED109 2.4 0.0 0.3 NYB B:TED109 2.4 0.0 0.3 CY6 B:TED109 2.4 0.0 0.3 OY1 B:TED109 2.4 0.0 0.3 H12A B:TED109 2.4 0.0 0.3 HY2A B:TED109 2.5 0.0 0.3 OY3 B:TED109 2.6 0.0 0.3 OY6 B:TED109 2.7 0.0 0.3 CY2 B:TED109 2.8 0.0 0.3 HY2A B:TED109 2.8 0.0 0.3 CY6 B:TED109 2.8 0.0 0.3 CY2 B:TED109 2.9 0.0 0.3 OY4 B:TED109 2.9 0.0 0.3 CY4 B:TED109 2.9 0.0 0.3 CY8 B:TED109 2.9 0.0 0.3 CY3 B:TED109 3.0 0.0 0.3 HY3 B:TED109 3.0 0.0 0.3 CY5 B:TED109 3.0 0.0 0.3 CY5 B:TED109 3.0 0.0 0.3 HY4 B:TED109 3.1 0.0 0.3 NYA B:TED109 3.1 0.0 0.3 NYB B:TED109 3.1 0.0 0.3 CY7 B:TED109 3.1 0.0 0.3 MN B:MN302 3.2 0.0 1.0 CY7 B:TED109 3.2 0.0 0.3 CY1 B:TED109 3.3 0.0 0.3 C12 B:TED109 3.3 0.0 0.3 CY3 B:TED109 3.3 0.0 0.3 CYA B:TED109 3.4 0.0 0.3 OY6 B:TED109 3.4 0.0 0.3 CYB B:TED109 3.4 0.0 0.3 CY5 B:TED109 3.4 0.0 0.3 HYA B:TED109 3.4 0.0 0.3 N13 B:TED109 3.4 0.0 0.3 CYB B:TED109 3.6 0.0 0.3 HY2A B:TED109 3.7 0.0 0.3 HY2 B:TED109 3.7 0.0 0.3 H12 B:TED109 3.7 0.0 0.3 HYA B:TED109 3.8 0.0 0.3 CY1 B:TED109 3.8 0.0 0.3 HY3A B:TED109 3.8 0.0 0.3 HY2 B:TED109 3.8 0.0 0.3 CY8 B:TED109 3.8 0.0 0.3 CYA B:TED109 3.9 0.0 0.3 CYB B:TED109 3.9 0.0 0.3 NYA B:TED109 3.9 0.0 0.3 CYA B:TED109 3.9 0.0 0.3 OY6 B:TED109 3.9 0.0 0.3 HYB B:TED109 4.0 0.0 0.3 HY1 B:TED109 4.0 0.0 0.3 CY4 B:TED109 4.0 0.0 0.3 HY4A B:TED109 4.0 0.0 0.3 HY1A B:TED109 4.0 0.0 0.3 HYBA B:TED109 4.0 0.0 0.3 HY3A B:TED109 4.0 0.0 0.3 HYBA B:TED109 4.1 0.0 0.3 CY1 B:TED109 4.1 0.0 0.3 OY8 B:TED109 4.1 0.0 0.3 CY3 B:TED109 4.1 0.0 0.3 HY3 B:TED109 4.2 0.0 0.3 HY3 B:TED109 4.2 0.0 0.3 HYB B:TED109 4.2 0.0 0.3 HYA B:TED109 4.2 0.0 0.3 HY1A B:TED109 4.2 0.0 0.3 HY4 B:TED109 4.3 0.0 0.3 N13 B:TED109 4.3 0.0 0.3 HYAA B:TED109 4.3 0.0 0.3 HN13 B:TED109 4.3 0.0 0.3 H12 B:TED109 4.3 0.0 0.3 OY3 B:TED109 4.3 0.0 0.3 OY7 B:TED109 4.3 0.0 0.3 OY7 B:TED109 4.4 0.0 0.3 H12 B:TED109 4.4 0.0 0.3 HYB B:TED109 4.4 0.0 0.3 H11 B:TED109 4.4 0.0 0.3 CY7 B:TED109 4.5 0.0 0.3 C11 B:TED109 4.5 0.0 0.3 H11A B:TED109 4.6 0.0 0.3 N13 B:TED109 4.6 0.0 0.3 HY1 B:TED109 4.6 0.0 0.3 H11A B:TED109 4.7 0.0 0.3 HY1 B:TED109 4.8 0.0 0.3 C12 B:TED109 4.8 0.0 0.3 HYAA B:TED109 4.8 0.0 0.3 HY1A B:TED109 4.9 0.0 0.3 HYBA B:TED109 4.9 0.0 0.3 HY4A B:TED109 4.9 0.0 0.3 C12 B:TED109 5.0 0.0 0.3 OY8 B:TED109 5.0 0.0 0.3 HYAA B:TED109 5.0 0.0 0.3

J.N.Scarsdale, H.D.Webb, G.D.Ginder, D.C.Williams. Solution Structure and Dynamic Analysis of Chicken MBD2 Methyl Binding Domain Bound to A Target-Methylated Dna Sequence. Nucleic Acids Res. V. 39 6741 2011.
ISSN: ISSN 0305-1048
PubMed: 21531701
DOI: 10.1093/NAR/GKR262