Manganese in PDB 2jeb: Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions

The structure of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions, PDB code: 2jeb was solved by E.Lorentzen, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.54 / 2.4
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	133.640, 133.640, 133.640, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 25.8

The structure of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Manganese atom in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions (pdb code 2jeb). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions, PDB code: 2jeb:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:76.2 occ:1.00 OD1 A:ASP72 2.3 50.1 1.0 CG A:ASP72 3.2 50.3 1.0 OD2 A:ASP72 3.4 48.5 1.0 OE1 A:GLU70 3.9 52.3 1.0 O A:ILE71 4.3 51.0 1.0 CB A:ASP72 4.6 51.2 1.0 CD A:GLU70 4.8 50.1 1.0 CB A:GLU70 4.9 49.1 1.0 CA A:ASP72 5.0 51.1 1.0

Manganese binding site 2 out of 2 in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions within 5.0Å range: probe atom residue distance (Å) B Occ I:Mn301 b:66.3 occ:1.00 OE2 I:GLU64 4.0 46.2 1.0 O I:HOH2012 4.4 53.9 1.0 O I:HOH2011 4.7 52.8 1.0 CD I:GLU64 5.0 46.5 1.0

E.Lorentzen, A.Dziembowski, D.Lindner, B.Seraphin, E.Conti. Rna Channelling By the Archaeal Exosome. Embo Rep. V. 8 470 2007.
ISSN: ISSN 1469-221X
PubMed: 17380186
DOI: 10.1038/SJ.EMBOR.7400945