Manganese in the structure of Crystal Structure of Alpha-1,3 Galactosyltransferase (C- Terminus Truncated Mutant-C3) in Complex With Udp Nd Tris (pdb 2jcj)

The binding sites of Manganese atom in the structure of Crystal Structure of Alpha-1,3 Galactosyltransferase (C- Terminus Truncated Mutant-C3) in Complex With Udp Nd Tris (pdb code 2jcj). This binding sites where shown with 5.0 Angstroms radius around Manganese atom. The 2jcj structure was solved by H.JAMALUDDIN, P.TUMBALE, S.G.WITHERS, K.R.ACHARYA, K.BREW, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 44.0-2.0 Space group C121 a (A) 121.790 b (A) 68.300 c (A) 43.960 alpha (°) 90.00 beta (°) 90.13 gamma (°) 90.00 Rfactor (%) 18.8 Rfree (%) 20.7 Manganese Binding Sites: Manganese binding site 1 out of 1 in 2jcj Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 2jcj. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp225, A: Asp227, A: Ala282, A: Glu360, A: Udp1366, A: Hoh2098, A: Hoh2099, A: Hoh2100, A: Hoh2147, A: Hoh2200, A: Hoh2201, conact list: Atom Atom Distance (A) Mn CB A:Asp225 3.51 Mn OD2 A:Asp225 2.13 Mn OD1 A:Asp225 4.26 Mn CG A:Asp225 3.15 Mn CA A:Asp225 4.92 Mn O A:Asp227 4.81 Mn CB A:Asp227 4.28 Mn OD2 A:Asp227 2.65 Mn OD1 A:Asp227 2.29 Mn CG A:Asp227 2.79 Mn CB A:Ala282 4.97 Mn OE2 A:Glu360 4.20 Mn O3B A:Udp1366 3.78 Mn C3' A:Udp1366 4.63 Mn PA A:Udp1366 3.53 Mn O2A A:Udp1366 4.41 Mn O1B A:Udp1366 2.21 Mn PB A:Udp1366 3.19 Mn O3' A:Udp1366 3.73 Mn C5' A:Udp1366 4.38 Mn C4' A:Udp1366 4.98 Mn O5' A:Udp1366 4.34 Mn O2B A:Udp1366 4.49 Mn O3A A:Udp1366 3.50 Mn O1A A:Udp1366 2.50 Mn O A:Hoh2098 4.46 Mn O A:Hoh2099 4.53 Mn O A:Hoh2100 4.42 Mn O A:Hoh2147 4.36 Mn O A:Hoh2200 2.49 Mn O A:Hoh2201 4.25 interactive model: