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Manganese in PDB 2jcj: Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris

Enzymatic activity of Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris

All present enzymatic activity of Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris:
2.4.1.151;

Protein crystallography data

The structure of Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris, PDB code: 2jcj was solved by H.Jamaluddin, P.Tumbale, S.G.Withers, K.R.Acharya, K.Brew, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.96 / 2.02
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.790, 68.300, 43.960, 90.00, 90.13, 90.00
R / Rfree (%) 18.8 / 20.7

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris (pdb code 2jcj). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris, PDB code: 2jcj:

Manganese binding site 1 out of 1 in 2jcj

Go back to Manganese Binding Sites List in 2jcj
Manganese binding site 1 out of 1 in the Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Alpha-1,3 Galactosyltransferase (C-Terminus Truncated Mutant-C3) in Complex with Udp and Tris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1367

b:15.6
occ:1.00
 OD2 A:ASP225 2.1 12.9 1.0
O1B A:UDP1366 2.2 20.0 1.0
OD1 A:ASP227 2.3 13.5 1.0
O A:HOH2200 2.5 20.3 1.0
O1A A:UDP1366 2.5 15.1 1.0
OD2 A:ASP227 2.7 13.7 1.0
CG A:ASP227 2.8 15.1 1.0
CG A:ASP225 3.2 11.5 1.0
PB A:UDP1366 3.2 27.8 1.0
O3A A:UDP1366 3.5 18.5 1.0
CB A:ASP225 3.5 12.2 1.0
PA A:UDP1366 3.5 19.1 1.0
O3' A:UDP1366 3.7 12.4 1.0
O3B A:UDP1366 3.8 27.8 1.0
OE2 A:GLU360 4.2 30.0 1.0
O A:HOH2201 4.3 28.1 1.0
OD1 A:ASP225 4.3 12.5 1.0
CB A:ASP227 4.3 13.5 1.0
O5' A:UDP1366 4.3 15.8 1.0
O A:HOH2147 4.4 23.4 1.0
C5' A:UDP1366 4.4 14.1 1.0
O2A A:UDP1366 4.4 15.9 1.0
O A:HOH2100 4.4 22.1 1.0
O A:HOH2098 4.5 27.0 1.0
O2B A:UDP1366 4.5 27.1 1.0
O A:HOH2099 4.5 27.9 1.0
C3' A:UDP1366 4.6 12.8 1.0
O A:ASP227 4.8 12.3 1.0
CA A:ASP225 4.9 12.1 1.0
CB A:ALA282 5.0 11.4 1.0
C4' A:UDP1366 5.0 12.2 1.0

Reference:

H.Jamaluddin, P.Tumbale, S.G.Withers, K.R.Acharya, K.Brew. Conformational Changes Induced By Binding Udp-2F-Galactose to Alpha-1,3 Galactosyltransferase-Implications For Catalysis. J.Mol.Biol. V. 369 1270 2007.
ISSN: ISSN 0022-2836
PubMed: 17493636
DOI: 10.1016/J.JMB.2007.04.012
Page generated: Tue Dec 15 04:03:08 2020

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