Manganese in PDB 2iae: Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
Enzymatic activity of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
All present enzymatic activity of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.:
3.1.3.16;
Protein crystallography data
The structure of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme., PDB code: 2iae
was solved by
U.S.Cho,
W.Xu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
3.50
|
Space group
|
P 21 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
265.301,
265.301,
265.301,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
25.7 /
31.6
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
(pdb code 2iae). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the
Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme., PDB code: 2iae:
Jump to Manganese binding site number:
1;
2;
3;
4;
Manganese binding site 1 out
of 4 in 2iae
Go back to
Manganese Binding Sites List in 2iae
Manganese binding site 1 out
of 4 in the Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn310
b:0.6
occ:1.00
|
OD1
|
C:ASP57
|
2.3
|
91.5
|
1.0
|
OD1
|
C:ASP85
|
2.3
|
87.7
|
1.0
|
MN
|
C:MN311
|
2.6
|
63.2
|
1.0
|
NE2
|
C:HIS59
|
2.8
|
91.2
|
1.0
|
O
|
C:HIS241
|
3.4
|
0.7
|
1.0
|
CG
|
C:ASP57
|
3.4
|
91.2
|
1.0
|
CA
|
C:HIS241
|
3.5
|
0.1
|
1.0
|
CG
|
C:ASP85
|
3.5
|
88.1
|
1.0
|
ND1
|
C:HIS241
|
3.6
|
0.6
|
1.0
|
CE1
|
C:HIS59
|
3.6
|
91.4
|
1.0
|
C
|
C:HIS241
|
3.8
|
0.5
|
1.0
|
ND2
|
C:ASN117
|
3.8
|
89.7
|
1.0
|
CD2
|
C:HIS59
|
4.0
|
91.8
|
1.0
|
OD2
|
C:ASP57
|
4.0
|
90.5
|
1.0
|
O
|
M:FGA6
|
4.1
|
91.2
|
1.0
|
CD2
|
C:HIS118
|
4.2
|
90.3
|
1.0
|
CB
|
C:ASP85
|
4.2
|
89.1
|
1.0
|
CB
|
C:HIS241
|
4.2
|
0.0
|
1.0
|
CG
|
C:HIS241
|
4.3
|
0.2
|
1.0
|
NE2
|
C:HIS167
|
4.3
|
90.2
|
1.0
|
OD1
|
C:ASN117
|
4.3
|
88.8
|
1.0
|
N
|
C:HIS241
|
4.4
|
0.1
|
1.0
|
NE2
|
C:HIS118
|
4.4
|
90.2
|
1.0
|
OD2
|
C:ASP85
|
4.5
|
86.4
|
1.0
|
CE1
|
C:HIS241
|
4.5
|
0.2
|
1.0
|
CG
|
C:ASN117
|
4.5
|
89.7
|
1.0
|
CE1
|
C:HIS167
|
4.6
|
91.0
|
1.0
|
CB
|
C:ASP57
|
4.6
|
91.3
|
1.0
|
OH
|
C:TYR267
|
4.6
|
0.5
|
1.0
|
CE2
|
C:PHE260
|
4.7
|
0.3
|
1.0
|
ND1
|
C:HIS59
|
4.8
|
92.1
|
1.0
|
C
|
M:FGA6
|
4.9
|
90.2
|
1.0
|
N
|
C:GLN242
|
4.9
|
0.7
|
1.0
|
|
Manganese binding site 2 out
of 4 in 2iae
Go back to
Manganese Binding Sites List in 2iae
Manganese binding site 2 out
of 4 in the Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn311
b:63.2
occ:1.00
|
ND2
|
C:ASN117
|
1.7
|
89.7
|
1.0
|
ND1
|
C:HIS241
|
2.1
|
0.6
|
1.0
|
NE2
|
C:HIS167
|
2.1
|
90.2
|
1.0
|
OD1
|
C:ASP85
|
2.5
|
87.7
|
1.0
|
MN
|
C:MN310
|
2.6
|
0.6
|
1.0
|
CG
|
C:ASN117
|
2.8
|
89.7
|
1.0
|
CG
|
C:HIS241
|
2.9
|
0.2
|
1.0
|
CE1
|
C:HIS167
|
2.9
|
91.0
|
1.0
|
CB
|
C:HIS241
|
3.0
|
0.0
|
1.0
|
CD2
|
C:HIS167
|
3.1
|
90.8
|
1.0
|
CE1
|
C:HIS241
|
3.1
|
0.2
|
1.0
|
CG
|
C:ASP85
|
3.2
|
88.1
|
1.0
|
OD1
|
C:ASN117
|
3.2
|
88.8
|
1.0
|
CA
|
C:HIS241
|
3.3
|
0.1
|
1.0
|
OD2
|
C:ASP85
|
3.4
|
86.4
|
1.0
|
OD1
|
C:ASP57
|
3.8
|
91.5
|
1.0
|
CB
|
C:ASN117
|
4.0
|
89.9
|
1.0
|
O
|
C:HIS241
|
4.0
|
0.7
|
1.0
|
ND1
|
C:HIS167
|
4.1
|
91.0
|
1.0
|
CD2
|
C:HIS241
|
4.1
|
0.4
|
1.0
|
N
|
C:ASN117
|
4.1
|
89.8
|
1.0
|
NE2
|
C:HIS241
|
4.2
|
0.2
|
1.0
|
C
|
C:HIS241
|
4.2
|
0.5
|
1.0
|
CG
|
C:HIS167
|
4.2
|
90.8
|
1.0
|
OD2
|
C:ASP57
|
4.2
|
90.5
|
1.0
|
N
|
C:HIS241
|
4.3
|
0.1
|
1.0
|
CB
|
C:ASP85
|
4.3
|
89.1
|
1.0
|
CG
|
C:ASP57
|
4.4
|
91.2
|
1.0
|
CD2
|
C:HIS118
|
4.4
|
90.3
|
1.0
|
CA
|
C:ASN117
|
4.6
|
90.0
|
1.0
|
O
|
C:LEU199
|
4.8
|
87.2
|
1.0
|
NE2
|
C:HIS59
|
4.9
|
91.2
|
1.0
|
N
|
C:HIS118
|
4.9
|
90.8
|
1.0
|
|
Manganese binding site 3 out
of 4 in 2iae
Go back to
Manganese Binding Sites List in 2iae
Manganese binding site 3 out
of 4 in the Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn310
b:86.2
occ:1.00
|
OD1
|
F:ASP85
|
2.1
|
0.4
|
1.0
|
OD2
|
F:ASP57
|
2.3
|
0.2
|
1.0
|
NE2
|
F:HIS59
|
2.3
|
0.4
|
1.0
|
MN
|
F:MN311
|
3.0
|
33.6
|
1.0
|
CE1
|
F:HIS59
|
3.0
|
0.5
|
1.0
|
CG
|
F:ASP85
|
3.3
|
0.8
|
1.0
|
CG
|
F:ASP57
|
3.4
|
0.9
|
1.0
|
CD2
|
F:HIS59
|
3.4
|
0.5
|
1.0
|
OH
|
F:TYR267
|
3.5
|
0.5
|
1.0
|
O
|
F:HIS241
|
3.8
|
0.1
|
1.0
|
CE1
|
F:HIS118
|
3.9
|
1.0
|
1.0
|
CB
|
F:ASP85
|
4.0
|
0.4
|
1.0
|
ND1
|
F:HIS118
|
4.0
|
0.9
|
1.0
|
ND2
|
F:ASN117
|
4.2
|
1.0
|
1.0
|
CB
|
F:ASP57
|
4.2
|
0.2
|
1.0
|
ND1
|
F:HIS59
|
4.2
|
0.2
|
1.0
|
OD2
|
F:ASP85
|
4.2
|
0.8
|
1.0
|
OD1
|
F:ASP57
|
4.3
|
0.7
|
1.0
|
O
|
N:FGA6
|
4.4
|
83.5
|
1.0
|
C
|
F:HIS241
|
4.4
|
0.9
|
1.0
|
CG
|
F:HIS59
|
4.4
|
0.9
|
1.0
|
NE2
|
F:HIS167
|
4.4
|
0.6
|
1.0
|
CA
|
F:HIS241
|
4.5
|
0.1
|
1.0
|
CE1
|
F:HIS167
|
4.6
|
0.1
|
1.0
|
CZ
|
F:TYR267
|
4.6
|
1.0
|
1.0
|
OD1
|
F:ASN117
|
4.6
|
0.7
|
1.0
|
CE2
|
F:PHE260
|
4.6
|
0.2
|
1.0
|
NE2
|
F:HIS118
|
4.7
|
0.0
|
1.0
|
CE2
|
F:TYR267
|
4.9
|
0.3
|
1.0
|
CG
|
F:ASN117
|
4.9
|
0.8
|
1.0
|
CZ
|
F:PHE260
|
4.9
|
0.0
|
1.0
|
|
Manganese binding site 4 out
of 4 in 2iae
Go back to
Manganese Binding Sites List in 2iae
Manganese binding site 4 out
of 4 in the Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Crystal Structure of A Protein Phosphatase 2A (PP2A) Holoenzyme. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn311
b:33.6
occ:1.00
|
ND2
|
F:ASN117
|
2.0
|
1.0
|
1.0
|
NE2
|
F:HIS167
|
2.1
|
0.6
|
1.0
|
OD1
|
F:ASP85
|
2.6
|
0.4
|
1.0
|
CG
|
F:ASN117
|
2.7
|
0.8
|
1.0
|
CD2
|
F:HIS241
|
2.8
|
0.6
|
1.0
|
CG
|
F:HIS241
|
2.9
|
0.2
|
1.0
|
OD1
|
F:ASN117
|
3.0
|
0.7
|
1.0
|
MN
|
F:MN310
|
3.0
|
86.2
|
1.0
|
CA
|
F:HIS241
|
3.1
|
0.1
|
1.0
|
CE1
|
F:HIS167
|
3.1
|
0.1
|
1.0
|
CD2
|
F:HIS167
|
3.2
|
0.5
|
1.0
|
O
|
F:HIS241
|
3.3
|
0.1
|
1.0
|
CG
|
F:ASP85
|
3.3
|
0.8
|
1.0
|
CB
|
F:HIS241
|
3.3
|
0.4
|
1.0
|
NE2
|
F:HIS241
|
3.4
|
0.1
|
1.0
|
ND1
|
F:HIS241
|
3.5
|
0.9
|
1.0
|
OD2
|
F:ASP85
|
3.6
|
0.8
|
1.0
|
C
|
F:HIS241
|
3.6
|
0.9
|
1.0
|
OD2
|
F:ASP57
|
3.6
|
0.2
|
1.0
|
CE1
|
F:HIS241
|
3.8
|
0.3
|
1.0
|
CB
|
F:ASN117
|
4.0
|
0.8
|
1.0
|
ND1
|
F:HIS167
|
4.2
|
0.4
|
1.0
|
N
|
F:HIS241
|
4.2
|
0.0
|
1.0
|
CG
|
F:HIS167
|
4.3
|
0.1
|
1.0
|
ND1
|
F:HIS118
|
4.4
|
0.9
|
1.0
|
CG
|
F:ASP57
|
4.4
|
0.9
|
1.0
|
CB
|
F:ASP85
|
4.5
|
0.4
|
1.0
|
OD1
|
F:ASP57
|
4.5
|
0.7
|
1.0
|
N
|
F:ASN117
|
4.6
|
0.6
|
1.0
|
CE1
|
F:HIS118
|
4.8
|
1.0
|
1.0
|
NE2
|
F:HIS59
|
4.9
|
0.4
|
1.0
|
CA
|
F:ASN117
|
4.9
|
1.0
|
1.0
|
N
|
F:GLN242
|
4.9
|
0.7
|
1.0
|
|
Reference:
U.S.Cho,
W.Xu.
Crystal Structure of A Protein Phosphatase 2A Heterotrimeric Holoenzyme. Nature V. 445 53 2007.
ISSN: ISSN 0028-0836
PubMed: 17086192
DOI: 10.1038/NATURE05351
Page generated: Sat Oct 5 14:26:20 2024
|