Atomistry » Manganese » PDB 2feu-2hr6 » 2gnm
Atomistry »
  Manganese »
    PDB 2feu-2hr6 »
      2gnm »

Manganese in PDB 2gnm: P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours

Protein crystallography data

The structure of P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours, PDB code: 2gnm was solved by A.Garcia-Pino, L.Buts, L.Wyns, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.196, 82.974, 123.781, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.3

Other elements in 2gnm:

The structure of P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours (pdb code 2gnm). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours, PDB code: 2gnm:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 2gnm

Go back to Manganese Binding Sites List in 2gnm
Manganese binding site 1 out of 2 in the P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn255

b:39.6
occ:0.50
OD2 A:ASP130 2.4 49.0 1.0
O A:HOH321 2.6 30.3 0.5
OD1 A:ASP130 2.6 51.9 1.0
CG A:ASP130 2.8 50.8 1.0
O A:HOH336 3.3 52.3 1.0
N A:TYR133 4.2 47.9 0.5
CB A:ASP130 4.3 34.6 1.0
CA A:CA254 4.3 28.9 0.5
O A:ASP86 4.4 30.0 1.0
CA A:GLY106 4.4 35.2 1.0
O A:GLY106 4.5 37.7 1.0
NE1 A:TRP140 4.5 36.5 0.5
O A:HOH257 4.6 21.7 0.5
CB A:PHE132 4.6 41.1 0.5
CA A:TYR133 4.7 47.3 0.5
OD1 A:ASP86 4.7 42.1 1.0
N A:PHE132 4.9 43.5 0.5
N A:PHE132 4.9 44.4 0.5

Manganese binding site 2 out of 2 in 2gnm

Go back to Manganese Binding Sites List in 2gnm
Manganese binding site 2 out of 2 in the P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of P. Angolensis Lectin (Pal) Treated with Edta For 39 Hours within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn254

b:47.4
occ:0.50
OD2 B:ASP130 2.6 64.6 1.0
O B:HOH266 2.6 28.2 0.5
O B:PHE132 2.7 52.8 1.0
CG B:ASP130 3.6 54.5 1.0
C B:PHE132 3.8 47.5 1.0
CA B:CA253 4.0 57.7 0.5
CB B:ASP130 4.1 37.2 1.0
CA B:PHE132 4.6 43.5 1.0
N B:PHE132 4.6 33.6 1.0
NE1 B:TRP140 4.7 88.2 1.0
CB B:PHE132 4.7 49.2 1.0
OD1 B:ASP130 4.7 67.5 1.0
CA B:GLY106 4.7 27.5 1.0
O B:GLY106 4.8 36.9 1.0
O B:ASP86 4.8 23.9 1.0
CE1 B:HIS146 4.9 28.0 1.0
OD1 B:ASP86 5.0 31.6 1.0

Reference:

A.Garcia-Pino, L.Buts, L.Wyns, R.Loris. Interplay Between Metal Binding and Cis/Trans Isomerization in Legume Lectins: Structural and Thermodynamic Study of P. Angolensis Lectin. J.Mol.Biol. V. 361 153 2006.
ISSN: ISSN 0022-2836
PubMed: 16824540
DOI: 10.1016/J.JMB.2006.06.006
Page generated: Tue Dec 15 04:02:14 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy