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Manganese in PDB 2gls: Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution

Enzymatic activity of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution

All present enzymatic activity of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution:
6.3.1.2;

Protein crystallography data

The structure of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution, PDB code: 2gls was solved by D.Eisenberg, R.J.Almassy, M.M.Yamashita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 3.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 235.500, 134.500, 200.100, 90.00, 102.80, 90.00
R / Rfree (%) n/a / n/a

Manganese Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Manganese atom in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution (pdb code 2gls). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 24 binding sites of Manganese where determined in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution, PDB code: 2gls:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 24 in 2gls

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Manganese binding site 1 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn469

b:10.9
occ:1.00
 O A:HOH471 1.9 21.1 1.0
OE2 A:GLU212 1.9 9.0 1.0
OE1 A:GLU220 2.2 8.4 1.0
OE2 A:GLU131 2.3 5.7 1.0
CD A:GLU212 2.7 9.0 1.0
CD A:GLU220 2.8 8.4 1.0
OE2 A:GLU220 2.9 8.4 1.0
OE1 A:GLU212 3.3 9.0 1.0
CG A:GLU212 3.5 9.0 1.0
CD A:GLU131 3.5 5.7 1.0
O A:HOH472 3.6 11.5 1.0
OE1 A:GLU131 4.1 5.7 1.0
CG A:GLU220 4.2 8.4 1.0
CG A:GLU131 4.5 5.7 1.0
CE1 A:HIS210 4.7 10.1 1.0
CB A:GLU220 4.8 8.4 1.0
NE2 A:HIS210 4.9 10.1 1.0
CB A:GLU212 5.0 9.0 1.0
OH A:TYR179 5.0 17.4 1.0

Manganese binding site 2 out of 24 in 2gls

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Manganese binding site 2 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn470

b:14.1
occ:1.00
 OE2 A:GLU129 1.5 11.0 1.0
OE2 A:GLU357 1.9 8.5 1.0
ND1 A:HIS269 2.1 10.4 1.0
CE1 A:HIS269 2.7 10.4 1.0
CD A:GLU129 2.8 11.0 1.0
O A:HOH472 2.9 11.5 1.0
CD A:GLU357 3.0 8.5 1.0
O A:HOH473 3.2 18.2 1.0
OE1 A:GLU357 3.3 8.5 1.0
CG A:HIS269 3.3 10.4 1.0
OE1 A:GLU129 3.4 11.0 1.0
CG A:GLU129 3.8 11.0 1.0
NE2 A:HIS271 3.9 14.3 1.0
CB A:HIS269 3.9 10.4 1.0
NE2 A:HIS269 3.9 10.4 1.0
CD2 A:HIS269 4.2 10.4 1.0
CG A:GLU357 4.2 8.5 1.0
CE1 A:HIS271 4.4 14.3 1.0
CB A:GLU129 4.8 11.0 1.0
O A:HOH471 4.8 21.1 1.0
CD2 A:HIS271 4.8 14.3 1.0
NH1 A:ARG359 4.9 12.3 1.0

Manganese binding site 3 out of 24 in 2gls

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Manganese binding site 3 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn469

b:10.9
occ:1.00
 O B:HOH471 1.9 21.1 1.0
OE2 B:GLU212 1.9 9.0 1.0
OE1 B:GLU220 2.2 8.4 1.0
OE2 B:GLU131 2.3 5.7 1.0
CD B:GLU212 2.7 9.0 1.0
CD B:GLU220 2.8 8.4 1.0
OE2 B:GLU220 2.9 8.4 1.0
OE1 B:GLU212 3.3 9.0 1.0
CG B:GLU212 3.5 9.0 1.0
CD B:GLU131 3.5 5.7 1.0
O B:HOH472 3.6 11.5 1.0
OE1 B:GLU131 4.1 5.7 1.0
CG B:GLU220 4.2 8.4 1.0
CG B:GLU131 4.5 5.7 1.0
CE1 B:HIS210 4.7 10.1 1.0
CB B:GLU220 4.8 8.4 1.0
NE2 B:HIS210 4.9 10.1 1.0
CB B:GLU212 5.0 9.0 1.0
OH B:TYR179 5.0 17.4 1.0

Manganese binding site 4 out of 24 in 2gls

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Manganese binding site 4 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn470

b:14.1
occ:1.00
 OE2 B:GLU129 1.5 11.0 1.0
OE2 B:GLU357 1.9 8.5 1.0
ND1 B:HIS269 2.1 10.4 1.0
CE1 B:HIS269 2.7 10.4 1.0
CD B:GLU129 2.8 11.0 1.0
O B:HOH472 2.9 11.5 1.0
CD B:GLU357 3.0 8.5 1.0
O B:HOH473 3.2 18.2 1.0
OE1 B:GLU357 3.3 8.5 1.0
CG B:HIS269 3.3 10.4 1.0
OE1 B:GLU129 3.4 11.0 1.0
CG B:GLU129 3.8 11.0 1.0
NE2 B:HIS271 3.9 14.3 1.0
CB B:HIS269 3.9 10.4 1.0
NE2 B:HIS269 3.9 10.4 1.0
CD2 B:HIS269 4.2 10.4 1.0
CG B:GLU357 4.2 8.5 1.0
CE1 B:HIS271 4.4 14.3 1.0
CB B:GLU129 4.8 11.0 1.0
O B:HOH471 4.8 21.1 1.0
CD2 B:HIS271 4.8 14.3 1.0
NH1 B:ARG359 4.9 12.3 1.0

Manganese binding site 5 out of 24 in 2gls

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Manganese binding site 5 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn469

b:10.9
occ:1.00
 O C:HOH471 1.9 21.1 1.0
OE2 C:GLU212 1.9 9.0 1.0
OE1 C:GLU220 2.2 8.4 1.0
OE2 C:GLU131 2.3 5.7 1.0
CD C:GLU212 2.7 9.0 1.0
CD C:GLU220 2.8 8.4 1.0
OE2 C:GLU220 2.9 8.4 1.0
OE1 C:GLU212 3.3 9.0 1.0
CG C:GLU212 3.5 9.0 1.0
CD C:GLU131 3.5 5.7 1.0
O C:HOH472 3.6 11.5 1.0
OE1 C:GLU131 4.1 5.7 1.0
CG C:GLU220 4.2 8.4 1.0
CG C:GLU131 4.5 5.7 1.0
CE1 C:HIS210 4.7 10.1 1.0
CB C:GLU220 4.8 8.4 1.0
NE2 C:HIS210 4.9 10.1 1.0
CB C:GLU212 5.0 9.0 1.0
OH C:TYR179 5.0 17.4 1.0

Manganese binding site 6 out of 24 in 2gls

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Manganese binding site 6 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn470

b:14.1
occ:1.00
 OE2 C:GLU129 1.5 11.0 1.0
OE2 C:GLU357 1.9 8.5 1.0
ND1 C:HIS269 2.1 10.4 1.0
CE1 C:HIS269 2.7 10.4 1.0
CD C:GLU129 2.8 11.0 1.0
O C:HOH472 2.9 11.5 1.0
CD C:GLU357 3.0 8.5 1.0
O C:HOH473 3.2 18.2 1.0
OE1 C:GLU357 3.3 8.5 1.0
CG C:HIS269 3.3 10.4 1.0
OE1 C:GLU129 3.4 11.0 1.0
CG C:GLU129 3.8 11.0 1.0
NE2 C:HIS271 3.9 14.3 1.0
CB C:HIS269 3.9 10.4 1.0
NE2 C:HIS269 3.9 10.4 1.0
CD2 C:HIS269 4.2 10.4 1.0
CG C:GLU357 4.2 8.5 1.0
CE1 C:HIS271 4.4 14.3 1.0
CB C:GLU129 4.8 11.0 1.0
O C:HOH471 4.8 21.1 1.0
CD2 C:HIS271 4.8 14.3 1.0
NH1 C:ARG359 4.9 12.3 1.0

Manganese binding site 7 out of 24 in 2gls

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Manganese binding site 7 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn469

b:10.9
occ:1.00
 O D:HOH471 1.9 21.1 1.0
OE2 D:GLU212 1.9 9.0 1.0
OE1 D:GLU220 2.2 8.4 1.0
OE2 D:GLU131 2.3 5.7 1.0
CD D:GLU212 2.7 9.0 1.0
CD D:GLU220 2.8 8.4 1.0
OE2 D:GLU220 2.9 8.4 1.0
OE1 D:GLU212 3.3 9.0 1.0
CG D:GLU212 3.5 9.0 1.0
CD D:GLU131 3.5 5.7 1.0
O D:HOH472 3.6 11.5 1.0
OE1 D:GLU131 4.1 5.7 1.0
CG D:GLU220 4.2 8.4 1.0
CG D:GLU131 4.5 5.7 1.0
CE1 D:HIS210 4.7 10.1 1.0
CB D:GLU220 4.8 8.4 1.0
NE2 D:HIS210 4.9 10.1 1.0
CB D:GLU212 5.0 9.0 1.0
OH D:TYR179 5.0 17.4 1.0

Manganese binding site 8 out of 24 in 2gls

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Manganese binding site 8 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn470

b:14.1
occ:1.00
 OE2 D:GLU129 1.5 11.0 1.0
OE2 D:GLU357 1.9 8.5 1.0
ND1 D:HIS269 2.1 10.4 1.0
CE1 D:HIS269 2.7 10.4 1.0
CD D:GLU129 2.8 11.0 1.0
O D:HOH472 2.9 11.5 1.0
CD D:GLU357 3.0 8.5 1.0
O D:HOH473 3.2 18.2 1.0
OE1 D:GLU357 3.3 8.5 1.0
CG D:HIS269 3.3 10.4 1.0
OE1 D:GLU129 3.4 11.0 1.0
CG D:GLU129 3.8 11.0 1.0
NE2 D:HIS271 3.9 14.3 1.0
CB D:HIS269 3.9 10.4 1.0
NE2 D:HIS269 3.9 10.4 1.0
CD2 D:HIS269 4.2 10.4 1.0
CG D:GLU357 4.2 8.5 1.0
CE1 D:HIS271 4.4 14.3 1.0
CB D:GLU129 4.8 11.0 1.0
O D:HOH471 4.8 21.1 1.0
CD2 D:HIS271 4.8 14.3 1.0
NH1 D:ARG359 4.9 12.3 1.0

Manganese binding site 9 out of 24 in 2gls

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Manganese binding site 9 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn469

b:10.9
occ:1.00
 O E:HOH471 1.9 21.1 1.0
OE2 E:GLU212 1.9 9.0 1.0
OE1 E:GLU220 2.2 8.4 1.0
OE2 E:GLU131 2.3 5.7 1.0
CD E:GLU212 2.7 9.0 1.0
CD E:GLU220 2.8 8.4 1.0
OE2 E:GLU220 2.9 8.4 1.0
OE1 E:GLU212 3.3 9.0 1.0
CG E:GLU212 3.5 9.0 1.0
CD E:GLU131 3.5 5.7 1.0
O E:HOH472 3.6 11.5 1.0
OE1 E:GLU131 4.1 5.7 1.0
CG E:GLU220 4.2 8.4 1.0
CG E:GLU131 4.5 5.7 1.0
CE1 E:HIS210 4.7 10.1 1.0
CB E:GLU220 4.8 8.4 1.0
NE2 E:HIS210 4.9 10.1 1.0
CB E:GLU212 5.0 9.0 1.0
OH E:TYR179 5.0 17.4 1.0

Manganese binding site 10 out of 24 in 2gls

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Manganese binding site 10 out of 24 in the Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of Refined Atomic Model of Glutamine Synthetase at 3.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn470

b:14.1
occ:1.00
 OE2 E:GLU129 1.5 11.0 1.0
OE2 E:GLU357 1.9 8.5 1.0
ND1 E:HIS269 2.1 10.4 1.0
CE1 E:HIS269 2.7 10.4 1.0
CD E:GLU129 2.8 11.0 1.0
O E:HOH472 2.9 11.5 1.0
CD E:GLU357 3.0 8.5 1.0
O E:HOH473 3.2 18.2 1.0
OE1 E:GLU357 3.3 8.5 1.0
CG E:HIS269 3.3 10.4 1.0
OE1 E:GLU129 3.4 11.0 1.0
CG E:GLU129 3.8 11.0 1.0
NE2 E:HIS271 3.9 14.3 1.0
CB E:HIS269 3.9 10.4 1.0
NE2 E:HIS269 3.9 10.4 1.0
CD2 E:HIS269 4.2 10.4 1.0
CG E:GLU357 4.2 8.5 1.0
CE1 E:HIS271 4.4 14.3 1.0
CB E:GLU129 4.8 11.0 1.0
O E:HOH471 4.8 21.1 1.0
CD2 E:HIS271 4.8 14.3 1.0
NH1 E:ARG359 4.9 12.3 1.0

Reference:

M.M.Yamashita, R.J.Almassy, C.A.Janson, D.Cascio, D.Eisenberg. Refined Atomic Model of Glutamine Synthetase at 3.5 A Resolution. J.Biol.Chem. V. 264 17681 1989.
ISSN: ISSN 0021-9258
PubMed: 2572586
Page generated: Sat Oct 5 14:11:38 2024

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