Manganese in PDB 2f4f: Crystal Structure of IS200 Transposase

The structure of Crystal Structure of IS200 Transposase, PDB code: 2f4f was solved by H.H.Lee, J.Y.Yoon, H.S.Kim, J.Y.Kang, K.H.Kim, D.J.Kim, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.48 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	91.930, 67.924, 65.332, 90.00, 128.73, 90.00
R / Rfree (%)	22.2 / 23.8

The binding sites of Manganese atom in the Crystal Structure of IS200 Transposase (pdb code 2f4f). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of IS200 Transposase, PDB code: 2f4f:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of IS200 Transposase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of IS200 Transposase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1501 b:22.9 occ:1.00 OE1 A:GLU55 2.1 26.4 1.0 ND1 A:HIS62 2.3 17.5 1.0 O A:HOH1540 2.3 24.4 1.0 O A:HOH1521 2.4 26.5 1.0 O A:HOH1519 2.4 26.0 1.0 O A:HOH1513 2.5 23.9 1.0 CD A:GLU55 3.0 27.9 1.0 CE1 A:HIS62 3.1 16.0 1.0 OE2 A:GLU55 3.3 31.1 1.0 CG A:HIS62 3.3 17.8 1.0 CB A:HIS62 3.7 16.6 1.0 O A:HOH1523 4.3 34.8 1.0 NE2 A:HIS62 4.3 17.4 1.0 O A:HOH1556 4.4 25.0 1.0 CG A:GLU55 4.4 24.8 1.0 CD2 A:HIS62 4.4 15.6 1.0 NE2 A:HIS60 4.7 22.7 1.0 O B:HOH1565 4.7 33.2 1.0 CB A:GLU55 4.9 20.8 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of IS200 Transposase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of IS200 Transposase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn1502 b:24.5 occ:1.00 OE1 B:GLU55 2.1 31.4 1.0 ND1 B:HIS62 2.2 19.8 1.0 O B:HOH1511 2.4 23.9 1.0 O B:HOH1531 2.5 25.2 1.0 O B:HOH1504 2.5 21.3 1.0 O B:HOH1506 2.6 27.6 1.0 CE1 B:HIS62 3.1 20.1 1.0 CD B:GLU55 3.1 30.0 1.0 CG B:HIS62 3.3 16.5 1.0 OE2 B:GLU55 3.5 31.4 1.0 CB B:HIS62 3.7 15.5 1.0 O B:HOH1545 3.9 36.9 1.0 O B:HOH1563 4.2 26.6 1.0 NE2 B:HIS62 4.3 20.0 1.0 CD2 B:HIS62 4.4 18.6 1.0 CG B:GLU55 4.4 26.2 1.0 NE2 B:HIS60 4.7 23.6 1.0 CB B:GLU55 4.9 21.3 1.0

H.H.Lee, J.Y.Yoon, H.S.Kim, J.Y.Kang, K.H.Kim, D.J.Kim, J.Y.Ha, B.Mikami, H.J.Yoon, S.W.Suh. Crystal Structure of A Metal Ion-Bound IS200 Transposase J.Biol.Chem. V. 281 4261 2006.
ISSN: ISSN 0021-9258
PubMed: 16340015
DOI: 10.1074/JBC.M511567200