Atomistry » Manganese » PDB 2dvd-2fer » 2eig
Atomistry »
  Manganese »
    PDB 2dvd-2fer »
      2eig »

Manganese in PDB 2eig: Lotus Tetragonolobus Seed Lectin (Isoform)

Protein crystallography data

The structure of Lotus Tetragonolobus Seed Lectin (Isoform), PDB code: 2eig was solved by F.B.M.B.Moreno, M.M.Vicoti, J.R.B.Abrego, T.M.De Oliveira, G.A.Bezerra, B.S.Cavada, W.Filgueira De Azevedo Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.46 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.892, 65.835, 102.537, 90.00, 92.00, 90.00
R / Rfree (%) 18.8 / 25.1

Other elements in 2eig:

The structure of Lotus Tetragonolobus Seed Lectin (Isoform) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Lotus Tetragonolobus Seed Lectin (Isoform) (pdb code 2eig). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Lotus Tetragonolobus Seed Lectin (Isoform), PDB code: 2eig:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 2eig

Go back to Manganese Binding Sites List in 2eig
Manganese binding site 1 out of 4 in the Lotus Tetragonolobus Seed Lectin (Isoform)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Lotus Tetragonolobus Seed Lectin (Isoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1101

b:18.9
occ:1.00
OD1 A:ASP127 2.1 12.6 1.0
O A:HOH1119 2.2 20.5 1.0
OE2 A:GLU118 2.2 15.8 1.0
NE2 A:HIS135 2.2 12.5 1.0
OD1 A:ASP120 2.2 19.8 1.0
O A:HOH1158 2.2 18.1 1.0
CG A:ASP127 3.1 17.9 1.0
CD A:GLU118 3.1 16.2 1.0
CE1 A:HIS135 3.1 12.0 1.0
CG A:ASP120 3.2 16.0 1.0
CD2 A:HIS135 3.2 9.5 1.0
OE1 A:GLU118 3.4 17.8 1.0
CB A:ASP120 3.6 16.7 1.0
OD2 A:ASP127 3.6 20.9 1.0
O A:HOH1127 3.9 12.1 1.0
CA A:CA1102 4.1 19.2 1.0
OG A:SER145 4.2 18.7 1.0
CB A:ASP127 4.2 20.4 1.0
OD2 A:ASP120 4.2 18.5 1.0
O A:HOH1126 4.3 21.1 1.0
ND1 A:HIS135 4.3 14.1 1.0
O A:ILE143 4.3 20.4 1.0
CG A:HIS135 4.3 14.3 1.0
CD A:PRO128 4.5 21.9 1.0
CG A:GLU118 4.5 14.6 1.0
CA A:ASP127 4.6 19.8 1.0
NE1 A:TRP126 4.7 16.8 1.0
CD1 A:TRP126 4.8 15.2 1.0

Manganese binding site 2 out of 4 in 2eig

Go back to Manganese Binding Sites List in 2eig
Manganese binding site 2 out of 4 in the Lotus Tetragonolobus Seed Lectin (Isoform)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Lotus Tetragonolobus Seed Lectin (Isoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1201

b:17.8
occ:1.00
OD1 B:ASP127 2.2 11.8 1.0
NE2 B:HIS135 2.2 4.3 1.0
O B:HOH3037 2.2 11.1 1.0
OE2 B:GLU118 2.3 12.4 1.0
OD1 B:ASP120 2.3 12.7 1.0
O B:HOH3036 2.3 15.1 1.0
CG B:ASP127 3.1 16.2 1.0
CD2 B:HIS135 3.1 5.7 1.0
CE1 B:HIS135 3.1 4.5 1.0
CG B:ASP120 3.2 12.2 1.0
CD B:GLU118 3.2 10.0 1.0
OE1 B:GLU118 3.5 15.2 1.0
OD2 B:ASP127 3.6 13.7 1.0
CB B:ASP120 3.6 13.6 1.0
O B:HOH3047 3.9 13.1 1.0
CA B:CA1202 4.1 14.0 1.0
CD B:PRO128 4.2 19.2 1.0
CB B:ASP127 4.2 16.6 1.0
OG B:SER145 4.2 14.5 1.0
OD2 B:ASP120 4.2 11.9 1.0
ND1 B:HIS135 4.3 7.1 1.0
CG B:HIS135 4.3 10.5 1.0
O B:ILE143 4.3 14.9 1.0
O B:HOH3022 4.4 13.6 1.0
CG B:GLU118 4.6 12.2 1.0
CA B:ASP127 4.6 16.3 1.0
NE1 B:TRP126 4.9 12.4 1.0

Manganese binding site 3 out of 4 in 2eig

Go back to Manganese Binding Sites List in 2eig
Manganese binding site 3 out of 4 in the Lotus Tetragonolobus Seed Lectin (Isoform)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Lotus Tetragonolobus Seed Lectin (Isoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn1301

b:20.2
occ:1.00
O C:HOH2002 2.0 17.2 1.0
OD1 C:ASP127 2.2 17.2 1.0
O C:HOH2029 2.2 16.4 1.0
OE2 C:GLU118 2.3 17.4 1.0
OD1 C:ASP120 2.3 11.7 1.0
NE2 C:HIS135 2.3 11.5 1.0
CG C:ASP127 3.1 16.7 1.0
CD C:GLU118 3.2 15.1 1.0
CD2 C:HIS135 3.3 10.9 1.0
CG C:ASP120 3.3 15.4 1.0
CE1 C:HIS135 3.4 13.6 1.0
OE1 C:GLU118 3.5 19.5 1.0
OD2 C:ASP127 3.6 15.4 1.0
CB C:ASP120 3.6 16.6 1.0
O C:HOH2014 3.7 14.2 1.0
CA C:CA1302 4.1 18.3 1.0
CB C:ASP127 4.2 19.0 1.0
OG C:SER145 4.3 15.2 1.0
OD2 C:ASP120 4.4 17.9 1.0
O C:HOH2005 4.4 14.2 1.0
CG C:HIS135 4.4 12.8 1.0
CD C:PRO128 4.4 22.4 1.0
O C:ILE143 4.4 18.3 1.0
ND1 C:HIS135 4.5 10.1 1.0
CG C:GLU118 4.6 14.2 1.0
CA C:ASP127 4.7 19.7 1.0
NE1 C:TRP126 4.8 22.5 1.0
CD1 C:TRP126 5.0 24.9 1.0

Manganese binding site 4 out of 4 in 2eig

Go back to Manganese Binding Sites List in 2eig
Manganese binding site 4 out of 4 in the Lotus Tetragonolobus Seed Lectin (Isoform)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Lotus Tetragonolobus Seed Lectin (Isoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn1401

b:20.4
occ:1.00
OD1 D:ASP120 2.0 14.1 1.0
OE2 D:GLU118 2.1 18.1 1.0
OD1 D:ASP127 2.2 19.1 1.0
O D:HOH1502 2.2 21.8 1.0
NE2 D:HIS135 2.2 18.8 1.0
O D:HOH1419 2.5 18.9 1.0
CG D:ASP120 3.1 14.0 1.0
CG D:ASP127 3.1 20.2 1.0
CD D:GLU118 3.1 18.6 1.0
CE1 D:HIS135 3.2 17.4 1.0
CD2 D:HIS135 3.2 14.3 1.0
CB D:ASP120 3.5 16.3 1.0
OD2 D:ASP127 3.6 16.5 1.0
OE1 D:GLU118 3.6 20.3 1.0
O D:HOH1439 3.7 21.2 1.0
OD2 D:ASP120 4.1 18.7 1.0
OG D:SER145 4.1 20.1 1.0
CA D:CA1402 4.2 21.7 1.0
CB D:ASP127 4.2 20.4 1.0
ND1 D:HIS135 4.3 14.0 1.0
CG D:HIS135 4.3 17.7 1.0
CD D:PRO128 4.4 23.1 1.0
CG D:GLU118 4.4 16.7 1.0
O D:ILE143 4.5 22.8 1.0
O D:HOH1431 4.5 18.5 1.0
CA D:ASP127 4.7 21.5 1.0
NE1 D:TRP126 4.9 21.7 1.0
CD1 D:TRP126 5.0 23.6 1.0

Reference:

F.B.M.B.Moreno, T.M.De Oliveira, D.E.Martil, M.M.Vicoti, G.A.Bezerra, J.R.B.Abrego, B.S.Cavada, W.Filgueira De Azevedo Jr.. Identification of A New Quaternary Association For Legume Lectins J.Struct.Biol. V. 161 133 2008.
ISSN: ISSN 1047-8477
PubMed: 18068379
DOI: 10.1016/J.JSB.2007.10.002
Page generated: Tue Dec 15 04:01:21 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy