Manganese in PDB 2df4: Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+

The structure of Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+, PDB code: 2df4 was solved by A.Nakamura, M.Yao, I.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.019, 91.654, 181.302, 90.00, 90.00, 90.00
R / Rfree (%)	23.8 / 27.7

The binding sites of Manganese atom in the Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+ (pdb code 2df4). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+, PDB code: 2df4:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:43.3 occ:1.00 OE1 B:GLU150 2.0 41.5 1.0 NE2 B:HIS12 2.3 51.5 1.0 OE2 B:GLU124 2.5 60.4 1.0 OE1 B:GLU124 2.5 58.2 1.0 CD B:GLU124 2.8 58.7 1.0 CD B:GLU150 3.1 40.4 1.0 CE1 B:HIS12 3.1 53.0 1.0 CD2 B:HIS12 3.4 52.3 1.0 O B:HOH504 3.7 38.0 1.0 NZ B:LYS79 3.8 51.4 1.0 OE2 B:GLU150 3.8 40.8 1.0 CG B:GLU150 4.2 37.8 1.0 OE1 B:GLN91 4.2 42.3 1.0 ND1 B:HIS12 4.3 52.1 1.0 CG B:GLU124 4.4 56.1 1.0 CG B:HIS12 4.5 52.6 1.0 OE2 B:GLU10 4.6 73.8 1.0 CB B:GLU150 4.7 37.4 1.0 NE2 B:GLN91 4.8 39.8 1.0 CD B:GLN91 4.9 40.7 1.0 NE2 B:HIS122 4.9 45.5 1.0

Manganese binding site 2 out of 2 in the Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Trna-Dependent Amidotransferase Gatcab Complexed with MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn502 b:86.0 occ:1.00 OE2 B:GLU10 2.3 73.8 1.0 CD B:GLU10 3.1 72.2 1.0 OD2 B:ASP192 3.1 64.7 1.0 OE2 B:GLU210 3.3 83.3 1.0 OE1 B:GLU10 3.5 73.1 1.0 NZ B:LYS212 3.6 90.5 1.0 CG B:ASP192 3.7 63.1 1.0 CB B:ASP192 3.9 58.8 1.0 CD B:GLU210 4.0 82.1 1.0 CG B:GLU10 4.2 68.0 1.0 OD1 B:ASP192 4.5 65.7 1.0 OE1 B:GLU210 4.5 84.6 1.0 CB B:GLU10 4.6 62.4 1.0 CG B:GLU210 4.9 78.2 1.0 CE B:LYS212 5.0 88.3 1.0

A.Nakamura, M.Yao, S.Chimnaronk, N.Sakai, I.Tanaka. Ammonia Channel Couples Glutaminase with Transamidase Reactions in Gatcab Science V. 312 1954 2006.
ISSN: ISSN 0036-8075
PubMed: 16809541
DOI: 10.1126/SCIENCE.1127156