Manganese in the structure of Crystal Structure of Bst-Rnase Hiii in Complex With MN2+ (pdb 2d0c)

The binding sites of Manganese atom in the structure of Crystal Structure of Bst-Rnase Hiii in Complex With MN2+ (pdb code 2d0c). This binding sites where shown with 5.0 Angstroms radius around Manganese atom. The 2d0c structure was solved by H.CHON, H.MATSUMURA, Y.KOGA, K.TAKANO, S.KANAYA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 19.6-2.6 Space group P21212 a (A) 67.288 b (A) 109.771 c (A) 48.370 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 20.9 Rfree (%) 27.4 Manganese Binding Sites: Manganese binding site 1 out of 1 in 2d0c Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 2d0c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp97, A: Glu98, A: Asp202, A: Glu203, A: Hoh516, A: Hoh524, A: Hoh567, A: Hoh568, A: Hoh569, A: Hoh572, A: Hoh605, conact list: Atom Atom Distance (A) Mn CB A:Asp97 4.58 Mn OD2 A:Asp97 3.69 Mn OD1 A:Asp97 2.27 Mn CG A:Asp97 3.30 Mn CA A:Asp97 4.74 Mn O A:Glu98 4.63 Mn N A:Glu98 4.47 Mn OE1 A:Glu98 3.88 Mn OE2 A:Glu98 2.74 Mn CD A:Glu98 3.67 Mn O A:Asp202 4.14 Mn CB A:Asp202 3.75 Mn OD2 A:Asp202 2.17 Mn C A:Asp202 4.76 Mn OD1 A:Asp202 4.35 Mn CG A:Asp202 3.27 Mn CA A:Asp202 4.91 Mn O A:Glu203 4.85 Mn O A:Hoh516 4.75 Mn O A:Hoh524 4.01 Mn O A:Hoh567 2.07 Mn O A:Hoh568 2.39 Mn O A:Hoh569 2.60 Mn O A:Hoh572 3.22 Mn O A:Hoh605 4.98 interactive model: