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Manganese in PDB 2boq: Crystal Structure of Versatile Peroxidase

Protein crystallography data

The structure of Crystal Structure of Versatile Peroxidase, PDB code: 2boq was solved by T.Choinowski, K.Piontek, A.T.Martinez, M.Perez-Boada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.25 / 1.33
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 62.799, 62.799, 98.222, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.2

Other elements in 2boq:

The structure of Crystal Structure of Versatile Peroxidase also contains other interesting chemical elements:

Arsenic (As) 1 atom
Iron (Fe) 1 atom
Calcium (Ca) 2 atoms
Zinc (Zn) 8 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Versatile Peroxidase (pdb code 2boq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Versatile Peroxidase, PDB code: 2boq:

Manganese binding site 1 out of 1 in 2boq

Go back to Manganese Binding Sites List in 2boq
Manganese binding site 1 out of 1 in the Crystal Structure of Versatile Peroxidase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Versatile Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1328

b:31.7
occ:1.00
OE2 A:GLU36 1.8 38.3 1.0
O1D A:HEM1320 2.1 18.9 1.0
CD A:GLU36 2.9 34.2 1.0
CGD A:HEM1320 3.0 15.5 1.0
OD2 A:ASP175 3.1 27.0 1.0
O2D A:HEM1320 3.3 13.6 1.0
OE1 A:GLU36 3.3 39.6 1.0
OD1 A:ASP175 3.5 21.4 1.0
O A:HOH2231 3.5 39.2 1.0
CG A:ASP175 3.5 22.3 1.0
O A:HOH2374 3.6 31.7 1.0
CG A:GLU40 3.8 15.2 1.0
O A:HOH2060 3.8 20.8 1.0
O A:HOH2229 4.2 37.8 1.0
CG A:GLU36 4.2 24.0 1.0
O A:HOH2230 4.2 13.2 1.0
CD A:GLU40 4.4 25.6 1.0
CBD A:HEM1320 4.4 12.3 1.0
O A:HOH2128 4.5 15.9 1.0
OE2 A:GLU40 4.5 27.1 1.0
O A:ALA173 4.5 13.3 1.0
O A:HOH2067 4.6 28.7 1.0
CB A:ASP175 4.8 17.0 1.0
CB A:ALA173 4.9 12.7 1.0
C A:ALA173 4.9 12.5 1.0

Reference:

M.Perez-Boada, F.J.Ruiz-Duenas, R.Pogni, R.Basosi, T.Choinowski, M.J.Martinez, K.Piontek, A.T.Martinez. Versatile Peroxidase Oxidation of High Redox Potential Aromatic Compounds: Site-Directed Mutagenesis, Spectroscopic and Crystallographic Investigation of Three Long-Range Electron Transfer Pathways. J.Mol.Biol. V. 354 385 2005.
ISSN: ISSN 0022-2836
PubMed: 16246366
DOI: 10.1016/J.JMB.2005.09.047
Page generated: Tue Dec 15 04:00:11 2020

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