Manganese in PDB 2bgg: The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex.

The structure of The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex., PDB code: 2bgg was solved by J.S.Parker, S.M.Roe, D.Barford, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	99.01 / 2.20
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	51.916, 61.206, 104.059, 76.54, 76.14, 79.35
R / Rfree (%)	18 / 24.3

The binding sites of Manganese atom in the The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex. (pdb code 2bgg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex., PDB code: 2bgg:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn1428 b:16.5 occ:1.00 OP1 P:C3 2.0 16.3 1.0 OP3 P:U1 2.1 15.4 1.0 OXT A:LEU427 2.1 16.8 1.0 OE1 A:GLN159 2.1 23.4 1.0 O A:HOH2283 2.3 11.3 1.0 O A:LEU427 2.4 14.7 1.0 C A:LEU427 2.6 15.7 1.0 CD A:GLN159 3.2 21.7 1.0 P P:U1 3.4 22.5 1.0 P P:C3 3.4 19.5 1.0 OP1 P:U1 3.6 18.3 1.0 NE2 A:GLN159 3.6 25.3 1.0 NZ A:LYS163 3.9 12.9 1.0 O3' P:U2 3.9 17.1 1.0 C5' P:U1 4.1 21.8 1.0 O5' P:U1 4.2 14.3 1.0 CA A:LEU427 4.2 14.1 1.0 NE A:ARG380 4.2 15.7 1.0 O P:HOH2004 4.3 31.1 1.0 OP2 P:C3 4.3 20.0 1.0 O A:HOH2281 4.3 17.9 1.0 NH2 A:ARG380 4.3 22.2 1.0 O A:HOH2282 4.4 19.3 1.0 NE2 A:GLN137 4.4 11.8 1.0 OP2 P:U1 4.5 13.6 1.0 O5' P:C3 4.5 18.2 1.0 CG A:GLN159 4.5 19.0 1.0 CE A:LYS163 4.6 10.7 1.0 CB A:LEU427 4.7 14.5 1.0 OE1 A:GLN137 4.7 17.3 1.0 CZ A:ARG380 4.8 18.9 1.0 CG A:ARG380 4.9 20.0 1.0 N A:LEU427 4.9 14.4 1.0 O A:HOH2104 5.0 58.6 1.0

Manganese binding site 2 out of 2 in the The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Structure of A Piwi Protein From Archaeoglobus Fulgidus Complexed with A 16NT Sirna Duplex. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn1428 b:23.3 occ:1.00 OP3 R:U1 2.0 25.4 1.0 OE1 B:GLN159 2.0 29.9 1.0 OP1 R:C3 2.1 31.5 1.0 O B:HOH2188 2.1 17.1 1.0 OXT B:LEU427 2.4 25.9 1.0 O B:LEU427 2.5 24.3 1.0 C B:LEU427 2.8 24.3 1.0 CD B:GLN159 3.0 30.2 1.0 P R:U1 3.4 28.9 1.0 P R:C3 3.5 33.5 1.0 NE2 B:GLN159 3.6 29.6 1.0 OP1 R:U1 3.6 28.9 1.0 NZ B:LYS163 4.1 20.2 1.0 C5' R:U1 4.1 31.7 1.0 NE B:ARG380 4.1 28.0 1.0 O3' R:U2 4.1 32.2 1.0 O5' R:U1 4.1 27.7 1.0 NH2 B:ARG380 4.2 27.6 1.0 O B:HOH2187 4.2 21.7 1.0 CG B:GLN159 4.2 26.6 1.0 CA B:LEU427 4.3 23.0 1.0 O R:HOH2002 4.3 40.6 1.0 OP2 R:C3 4.4 29.2 1.0 OP2 R:U1 4.4 21.6 1.0 O5' R:C3 4.5 34.0 1.0 NE2 B:GLN137 4.5 21.1 1.0 CZ B:ARG380 4.6 28.2 1.0 O B:HOH2185 4.7 31.0 1.0 CE B:LYS163 4.7 19.9 1.0 CG B:ARG380 4.9 27.5 1.0 CB B:LEU427 4.9 21.6 1.0 OE1 B:GLN137 4.9 23.6 1.0

J.S.Parker, S.M.Roe, D.Barford. Structural Insights Into Mrna Recognition From A Piwi Domain-Sirna Guide Complex Nature V. 434 663 2005.
ISSN: ISSN 0028-0836
PubMed: 15800628
DOI: 10.1038/NATURE03462