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Manganese in PDB 2apc: Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate

Enzymatic activity of Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate

All present enzymatic activity of Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate:
2.4.1.101;

Protein crystallography data

The structure of Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate, PDB code: 2apc was solved by J.M.Rini, R.D.Gordon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.51 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.964, 82.499, 102.422, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 22

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate (pdb code 2apc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate, PDB code: 2apc:

Manganese binding site 1 out of 1 in 2apc

Go back to Manganese Binding Sites List in 2apc
Manganese binding site 1 out of 1 in the Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with Udp-Glcnac Phosphonate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn448

b:10.0
occ:1.00
 O A:HOH539 2.1 10.7 1.0
O1B A:UDM449 2.2 10.5 1.0
OD2 A:ASP213 2.2 9.8 1.0
O A:HOH492 2.2 11.0 1.0
O1A A:UDM449 2.2 10.6 1.0
O A:HOH564 2.3 10.3 1.0
CG A:ASP213 3.1 11.1 1.0
PB A:UDM449 3.4 9.2 1.0
PA A:UDM449 3.4 10.0 1.0
OD1 A:ASP213 3.4 10.8 1.0
O3A A:UDM449 3.5 9.8 1.0
NH2 A:ARG117 4.1 9.9 1.0
O A:HOH600 4.1 13.6 1.0
OG1 A:THR315 4.1 12.5 1.0
NH1 A:ARG117 4.2 10.5 1.0
O2B A:UDM449 4.2 12.4 1.0
N2' A:UDM449 4.4 9.3 1.0
O A:GLY317 4.4 12.0 1.0
O2A A:UDM449 4.4 11.2 1.0
CB A:ASP213 4.5 10.9 1.0
O5D A:UDM449 4.5 9.7 1.0
O A:HOH645 4.5 11.3 1.0
OE2 A:GLU211 4.5 10.5 1.0
C5D A:UDM449 4.6 10.9 1.0
CZ A:ARG117 4.6 9.8 1.0
C8' A:UDM449 4.7 11.1 1.0
CB A:UDM449 4.8 9.2 1.0
CA A:GLY317 4.8 12.2 1.0

Reference:

R.D.Gordon, P.Sivarajah, M.Satkunarajah, D.Ma, C.A.Tarling, D.Vizitiu, S.G.Withers, J.M.Rini. X-Ray Crystal Structures of Rabbit N-Acetylglucosaminyltransferase I (Gnt I) in Complex with Donor Substrate Analogues. J.Mol.Biol. V. 360 67 2006.
ISSN: ISSN 0022-2836
PubMed: 16769084
DOI: 10.1016/J.JMB.2006.04.058
Page generated: Sat Aug 16 09:44:35 2025

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