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Manganese in PDB 2a9p: Medium Resolution BEF3 Bound RR02-Rec

Protein crystallography data

The structure of Medium Resolution BEF3 Bound RR02-Rec, PDB code: 2a9p was solved by A.Riboldi-Tunnicliffe, N.W.Isaacs, T.J.Mitchell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.32 / 1.82
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.705, 93.404, 37.611, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 20.6

Other elements in 2a9p:

The structure of Medium Resolution BEF3 Bound RR02-Rec also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Medium Resolution BEF3 Bound RR02-Rec (pdb code 2a9p). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Medium Resolution BEF3 Bound RR02-Rec, PDB code: 2a9p:

Manganese binding site 1 out of 1 in 2a9p

Go back to Manganese Binding Sites List in 2a9p
Manganese binding site 1 out of 1 in the Medium Resolution BEF3 Bound RR02-Rec


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Medium Resolution BEF3 Bound RR02-Rec within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn202

b:24.4
occ:1.00
O A:HOH268 1.9 33.4 1.0
F3 A:BEF201 2.0 26.6 1.0
OD1 A:ASP9 2.1 19.8 1.0
OD2 A:ASP52 2.1 17.6 1.0
O A:MET54 2.3 23.4 1.0
O A:HOH258 2.5 30.0 1.0
CG A:ASP52 3.1 19.0 1.0
CG A:ASP9 3.1 21.1 1.0
BE A:BEF201 3.4 23.1 1.0
C A:MET54 3.4 22.7 1.0
OD1 A:ASP52 3.4 21.0 1.0
OD2 A:ASP9 3.5 23.9 1.0
CB A:MET54 4.0 23.9 1.0
CA A:MET54 4.1 24.5 1.0
OD2 A:ASP8 4.1 22.5 1.0
N A:MET54 4.2 21.7 1.0
OE2 A:GLU10 4.3 26.6 1.0
F2 A:BEF201 4.4 23.8 1.0
CB A:ASP52 4.4 16.9 1.0
N A:ASP9 4.4 18.0 1.0
CB A:ASP9 4.5 18.9 1.0
F1 A:BEF201 4.5 26.7 1.0
N A:LEU55 4.5 22.7 1.0
CD2 A:LEU55 4.6 19.0 1.0
O A:HOH250 4.6 38.8 1.0
O A:HOH235 4.6 43.1 1.0
NZ A:LYS101 4.6 23.4 1.0
CG A:ASP8 4.7 21.0 1.0
CA A:LEU55 4.8 21.9 1.0
OD1 A:ASP8 4.8 22.8 1.0
CG A:GLU10 5.0 24.7 1.0
CA A:ASP9 5.0 18.8 1.0

Reference:

A.Riboldi-Tunnicliffe, N.W.Isaacs, T.J.Mitchell. Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site. To Be Published.
Page generated: Sat Aug 16 09:42:15 2025

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