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Manganese in PDB 2a9o: Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site

Protein crystallography data

The structure of Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site, PDB code: 2a9o was solved by A.Riboldi-Tunnicliffe, N.W.Isaacs, T.J.Mitchell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.22 / 1.65
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.563, 93.324, 37.456, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.6

Other elements in 2a9o:

The structure of Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site (pdb code 2a9o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site, PDB code: 2a9o:

Manganese binding site 1 out of 1 in 2a9o

Go back to Manganese Binding Sites List in 2a9o
Manganese binding site 1 out of 1 in the Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn202

b:26.0
occ:1.00
OD2 A:ASP52 1.8 14.8 1.0
F3 A:BEF201 2.1 27.3 1.0
OD1 A:ASP9 2.2 20.7 1.0
O A:MET54 2.2 20.8 1.0
O A:HOH270 2.3 23.9 1.0
CG A:ASP52 2.9 19.0 1.0
CG A:ASP9 3.2 22.5 1.0
BE A:BEF201 3.3 19.4 1.0
C A:MET54 3.4 21.9 1.0
OD1 A:ASP52 3.4 15.6 1.0
OD2 A:ASP9 3.6 26.0 1.0
CB A:MET54 3.9 23.6 1.0
CA A:MET54 4.0 24.1 1.0
OD1 A:ASP8 4.1 22.6 1.0
N A:MET54 4.2 22.8 1.0
OE2 A:GLU10 4.2 31.5 1.0
CB A:ASP52 4.2 16.0 1.0
O A:HOH205 4.3 26.7 1.0
F2 A:BEF201 4.4 23.9 1.0
F1 A:BEF201 4.4 20.6 1.0
N A:LEU55 4.4 22.4 1.0
N A:ASP9 4.4 19.2 1.0
CB A:ASP9 4.5 19.3 1.0
NZ A:LYS101 4.6 11.2 0.5
CD2 A:LEU55 4.6 19.5 1.0
CG A:ASP8 4.6 19.8 1.0
CG A:GLU10 4.8 29.0 1.0
CA A:LEU55 4.8 21.7 1.0
OD2 A:ASP8 4.8 21.0 1.0
CA A:ASP9 4.9 20.7 1.0
CD A:GLU10 5.0 31.7 1.0
CG A:MET54 5.0 26.8 1.0

Reference:

A.Riboldi-Tunnicliffe, N.W.Isaacs, T.J.Mitchell. Crystal Structures of An Activated Yycf Homologue, the Essential Response Regulator From S.Pneumoniae in Complex with BEF3 and the Effect of pH on BEF3 Binding, Possible Phosphate in the Active Site. To Be Published.
Page generated: Sat Oct 5 13:23:21 2024

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