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Manganese in PDB 2a7a: On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength

Protein crystallography data

The structure of On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength, PDB code: 2a7a was solved by C.Mueller-Dieckmann, S.Panjikar, P.A.Tucker, M.S.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.75
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.968, 85.059, 88.367, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20.6

Other elements in 2a7a:

The structure of On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength also contains other interesting chemical elements:

Xenon (Xe) 5 atoms
Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength (pdb code 2a7a). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength, PDB code: 2a7a:

Manganese binding site 1 out of 1 in 2a7a

Go back to Manganese Binding Sites List in 2a7a
Manganese binding site 1 out of 1 in the On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:2.6
occ:1.00
OD2 A:ASP10 2.1 5.1 1.0
O A:HOH333 2.2 2.0 1.0
OE2 A:GLU8 2.2 5.7 1.0
O A:HOH309 2.2 2.6 1.0
OD1 A:ASP19 2.2 3.8 1.0
NE2 A:HIS24 2.3 5.3 1.0
CG A:ASP19 3.1 7.7 1.0
CG A:ASP10 3.1 5.1 1.0
CD A:GLU8 3.2 7.6 1.0
CE1 A:HIS24 3.2 6.7 1.0
CD2 A:HIS24 3.3 3.3 1.0
OE1 A:GLU8 3.5 7.6 1.0
CB A:ASP10 3.5 3.6 1.0
OD2 A:ASP19 3.5 4.0 1.0
O A:HOH322 3.9 2.0 1.0
OG A:SER34 4.1 7.3 1.0
CA A:CA302 4.2 2.0 1.0
O A:HOH385 4.2 17.5 1.0
CB A:ASP19 4.2 6.4 1.0
OD1 A:ASP10 4.3 6.1 1.0
ND1 A:HIS24 4.4 4.3 1.0
CG A:HIS24 4.4 3.8 1.0
CG A:GLU8 4.5 5.3 1.0
O A:VAL32 4.5 7.8 1.0
CA A:ASP19 4.6 6.1 1.0

Reference:

C.Mueller-Dieckmann, S.Panjikar, P.A.Tucker, M.S.Weiss. On the Routine Use of Soft X-Rays in Macromolecular Crystallography. Part III. the Optimal Data-Collection Wavelength. Acta Crystallogr.,Sect.D V. 61 1263 2005.
ISSN: ISSN 0907-4449
PubMed: 16131760
DOI: 10.1107/S0907444905021475
Page generated: Tue Dec 15 03:59:04 2020

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