Manganese in PDB 283d: A Curved Rna Helix Incorporating An Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing

The structure of A Curved Rna Helix Incorporating An Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing, PDB code: 283d was solved by K.J.Baeyens, H.L.De Bondt, A.Pardi, S.R.Holbrook, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.30
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	37.710, 37.710, 88.300, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 19.8

The binding sites of Manganese atom in the A Curved Rna Helix Incorporating An Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing (pdb code 283d). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the A Curved Rna Helix Incorporating An Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing, PDB code: 283d:

Manganese binding site 1 out of 1 in the A Curved Rna Helix Incorporating An Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of A Curved Rna Helix Incorporating An Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn13 b:30.8 occ:1.00 O A:HOH29 2.1 28.6 1.0 OP2 A:A8 2.1 20.8 1.0 O A:HOH24 2.2 68.0 1.0 N7 A:G9 2.3 22.7 1.0 O A:HOH27 3.0 56.0 1.0 C8 A:G9 3.1 18.8 1.0 C5 A:G9 3.5 22.3 1.0 P A:A8 3.5 23.4 1.0 O6 A:G9 3.9 25.8 1.0 C6 A:G9 4.1 24.0 1.0 O5' A:A8 4.1 26.4 1.0 OP1 A:A8 4.1 22.8 1.0 N9 A:G9 4.4 20.9 1.0 O A:HOH28 4.4 54.4 1.0 O A:HOH31 4.4 51.3 1.0 N7 A:G10 4.5 24.6 1.0 C4 A:G9 4.6 22.1 1.0 O3' A:A7 4.7 21.6 1.0 OP2 A:G9 4.8 30.0 1.0 C8 A:G10 4.9 22.1 1.0

K.J.Baeyens, H.L.De Bondt, A.Pardi, S.R.Holbrook. A Curved Rna Helix Incorporating An Internal Loop with G.A and A.A Non-Watson-Crick Base Pairing. Proc.Natl.Acad.Sci.Usa V. 93 12851 1996.
ISSN: ISSN 0027-8424
PubMed: 8917508
DOI: 10.1073/PNAS.93.23.12851