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Manganese in PDB 1zip: Bacillus Stearothermophilus Adenylate Kinase

Enzymatic activity of Bacillus Stearothermophilus Adenylate Kinase

All present enzymatic activity of Bacillus Stearothermophilus Adenylate Kinase:
2.7.4.3;

Protein crystallography data

The structure of Bacillus Stearothermophilus Adenylate Kinase, PDB code: 1zip was solved by M.B.Berry, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.200, 62.400, 41.600, 90.00, 116.70, 90.00
R / Rfree (%) 15.6 / 22

Other elements in 1zip:

The structure of Bacillus Stearothermophilus Adenylate Kinase also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Bacillus Stearothermophilus Adenylate Kinase (pdb code 1zip). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Bacillus Stearothermophilus Adenylate Kinase, PDB code: 1zip:

Manganese binding site 1 out of 1 in 1zip

Go back to Manganese Binding Sites List in 1zip
Manganese binding site 1 out of 1 in the Bacillus Stearothermophilus Adenylate Kinase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Bacillus Stearothermophilus Adenylate Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn220

b:19.2
occ:1.00
O A:HOH302 2.1 6.8 0.7
O A:HOH301 2.1 13.6 0.8
O A:HOH303 2.1 14.8 1.0
O A:HOH300 2.2 9.0 0.7
O2G A:AP5218 2.3 15.7 1.0
O2B A:AP5218 2.3 8.2 1.0
PG A:AP5218 3.5 11.6 1.0
PB A:AP5218 3.5 11.1 1.0
O3B A:AP5218 3.7 16.3 1.0
N A:GLY14 4.0 9.6 1.0
O3G A:AP5218 4.0 13.0 1.0
O A:HOH353 4.1 32.0 0.9
O1E A:AP5218 4.2 11.5 1.0
CA A:GLY14 4.2 9.9 1.0
O2E A:AP5218 4.2 21.4 1.0
PE A:AP5218 4.4 17.3 1.0
O3A A:AP5218 4.4 12.7 1.0
OD2 A:ASP84 4.5 13.0 1.0
O1B A:AP5218 4.5 10.6 1.0
OD1 A:ASP84 4.6 14.3 1.0
O1G A:AP5218 4.6 14.8 1.0
O3D A:AP5218 4.6 21.2 1.0
O2A A:AP5218 4.7 14.0 1.0
PD A:AP5218 4.8 19.3 1.0
PA A:AP5218 4.9 12.3 1.0
CB A:LYS13 4.9 9.3 1.0
O A:HOH496 4.9 49.8 0.8
NH1 A:ARG160 4.9 16.3 1.0
CG A:ASP84 5.0 14.2 1.0

Reference:

M.B.Berry, G.N.Phillips Jr.. Crystal Structures of Bacillus Stearothermophilus Adenylate Kinase with Bound AP5A, MG2+ AP5A, and MN2+ AP5A Reveal An Intermediate Lid Position and Six Coordinate Octahedral Geometry For Bound MG2+ and MN2+. Proteins V. 32 276 1998.
ISSN: ISSN 0887-3585
PubMed: 9715904
DOI: 10.1002/(SICI)1097-0134(19980815)32:3<276::AID-PROT3>3.0.CO;2-G
Page generated: Tue Dec 15 03:58:43 2020

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