Manganese in PDB 1zdf: SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese

All present enzymatic activity of SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese:
2.4.1.186;

The structure of SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese, PDB code: 1zdf was solved by T.D.Hurley, S.L.Stout, E.Miner, J.Zhou, P.J.Roach, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.00 / 2.45
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	58.890, 105.380, 122.210, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 21.7

The binding sites of Manganese atom in the SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese (pdb code 1zdf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese, PDB code: 1zdf:

Manganese binding site 1 out of 1 in the SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of SER162 Mutant of Glycogenin Complexed with Udp-Glucose and Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn400 b:39.8 occ:1.00 O1B A:UPG411 2.0 60.0 1.0 NE2 A:HIS211 2.2 27.2 1.0 OD1 A:ASP103 2.3 36.6 1.0 O1A A:UPG411 2.3 56.2 1.0 OD2 A:ASP101 2.4 30.3 1.0 OD2 A:ASP103 2.5 36.0 1.0 CG A:ASP103 2.7 34.9 1.0 CE1 A:HIS211 3.1 27.7 1.0 CD2 A:HIS211 3.2 26.1 1.0 CG A:ASP101 3.2 30.2 1.0 CB A:ASP101 3.4 28.1 1.0 PB A:UPG411 3.5 58.9 1.0 PA A:UPG411 3.5 57.0 1.0 O3C A:UPG411 3.6 50.6 1.0 O3A A:UPG411 3.7 58.4 1.0 C5C A:UPG411 3.9 54.0 1.0 O5C A:UPG411 4.0 56.7 1.0 CB A:ASP103 4.2 29.7 1.0 O2B A:UPG411 4.2 58.9 1.0 CD2 A:LEU213 4.3 54.5 1.0 ND1 A:HIS211 4.3 27.5 1.0 O3B A:UPG411 4.3 62.8 1.0 CG A:HIS211 4.3 27.2 1.0 C3C A:UPG411 4.4 51.4 1.0 OD1 A:ASP101 4.4 33.0 1.0 C4C A:UPG411 4.5 53.2 1.0 NZ A:LYS217 4.6 42.1 1.0 C6' A:UPG411 4.6 65.4 1.0 O5' A:UPG411 4.6 68.2 1.0 C5' A:UPG411 4.6 67.2 1.0 O6' A:UPG411 4.6 61.8 1.0 O2A A:UPG411 4.8 58.8 1.0 CA A:ASP101 4.8 26.2 1.0 N A:ASP103 5.0 26.2 1.0

T.D.Hurley, S.Stout, E.Miner, J.Zhou, P.J.Roach. Requirements For Catalysis in Mammalian Glycogenin. J.Biol.Chem. V. 280 23892 2005.
ISSN: ISSN 0021-9258
PubMed: 15849187
DOI: 10.1074/JBC.M502344200