Manganese in PDB 1zao: Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions

The structure of Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions, PDB code: 1zao was solved by N.Laronde-Leblanc, T.Guszczynski, T.Copeland, A.Wlodawer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.25 / 1.84
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	116.862, 44.365, 62.793, 90.00, 94.01, 90.00
R / Rfree (%)	18.4 / 21.2

The binding sites of Manganese atom in the Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions (pdb code 1zao). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions, PDB code: 1zao:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn283 b:13.4 occ:0.50 OD2 A:ASP235 2.2 17.0 1.0 O A:HOH615 2.2 28.6 1.0 O2 A:PO4285 2.3 15.2 0.5 O2A A:ATP286 2.3 17.2 1.0 O1B A:ATP286 2.3 21.9 1.0 OD1 A:ASN223 2.4 19.2 1.0 CG A:ASP235 3.1 15.2 1.0 MN A:MN284 3.1 18.2 0.5 CG A:ASN223 3.3 18.5 1.0 PA A:ATP286 3.4 18.4 1.0 PB A:ATP286 3.5 20.6 1.0 P A:PO4285 3.5 18.3 0.5 O3A A:ATP286 3.6 20.7 1.0 ND2 A:ASN223 3.6 14.8 1.0 CB A:ASP235 3.7 12.8 1.0 O4 A:PO4285 3.7 17.0 0.5 OD1 A:ASP235 4.0 15.4 1.0 O A:HOH529 4.1 47.6 1.0 O1 A:PO4285 4.2 17.4 0.5 O2G A:ATP286 4.3 21.4 1.0 O1A A:ATP286 4.4 16.3 1.0 O2B A:ATP286 4.4 22.3 1.0 O5' A:ATP286 4.6 19.4 1.0 O3 A:PO4285 4.6 18.3 0.5 O3B A:ATP286 4.7 20.1 1.0 CB A:ASN223 4.7 16.4 1.0 O A:TYR222 4.8 17.2 1.0 OD2 A:ASP218 4.8 18.3 1.0 O A:HOH315 4.8 25.9 1.0 C5' A:ATP286 4.8 22.4 1.0 O3' A:ATP286 4.9 30.9 1.0 OE2 A:GLU103 5.0 35.2 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of A.Fulgidus RIO2 Kinase Complexed with Atp and Manganese Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn284 b:18.2 occ:0.50 O2G A:ATP286 2.1 21.4 1.0 O1B A:ATP286 2.3 21.9 1.0 OE1 A:GLU103 2.3 27.6 1.0 O2 A:PO4285 2.3 15.2 0.5 O A:HOH315 2.3 25.9 1.0 OD2 A:ASP235 2.4 17.0 1.0 MN A:MN283 3.1 13.4 0.5 CD A:GLU103 3.2 29.0 1.0 CG A:ASP235 3.3 15.2 1.0 PG A:ATP286 3.4 21.6 1.0 PB A:ATP286 3.4 20.6 1.0 OD1 A:ASP235 3.5 15.4 1.0 P A:PO4285 3.5 18.3 0.5 OE2 A:GLU103 3.5 35.2 1.0 O3B A:ATP286 3.5 20.1 1.0 O3 A:PO4285 3.9 18.3 0.5 O1 A:PO4285 3.9 17.4 0.5 OD2 A:ASP218 3.9 18.3 1.0 O1G A:ATP286 4.1 20.6 1.0 CE1 A:HIS126 4.2 31.3 1.0 O3A A:ATP286 4.2 20.7 1.0 NE2 A:HIS126 4.3 27.6 1.0 OE1 A:GLN238 4.4 18.9 1.0 CG A:GLU103 4.4 25.1 1.0 O3G A:ATP286 4.6 21.9 1.0 CB A:GLU103 4.6 21.7 1.0 O2B A:ATP286 4.6 22.3 1.0 O2A A:ATP286 4.7 17.2 1.0 CB A:ASP235 4.7 12.8 1.0 O A:HOH615 4.7 28.6 1.0 O4 A:PO4285 4.7 17.0 0.5 ND2 A:ASN223 4.9 14.8 1.0 OD1 A:ASN223 4.9 19.2 1.0

N.Laronde-Leblanc, T.Guszczynski, T.Copeland, A.Wlodawer. Autophosphorylation of Archaeoglobus Fulgidus RIO2 and Crystal Structures of Its Nucleotide-Metal Ion Complexes. Febs J. V. 272 2800 2005.
ISSN: ISSN 1742-464X
PubMed: 15943813
DOI: 10.1111/J.1742-4658.2005.04702.X