Manganese binding site 1 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U6, A: G7, |
conact list:
Atom | Atom | Distance (A) | Mn | O4 A:U6 | 4.56 | Mn | N7 A:G7 | 4.78 | Mn | O6 A:G7 | 4.45 |
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Manganese binding site 2 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A8, A: G9, B: A8, B: G9, B: G10, |
conact list:
Atom | Atom | Distance (A) | Mn | O3' A:A8 | 3.95 | Mn | O2' A:A8 | 4.75 | Mn | OP1 A:G9 | 2.51 | Mn | P A:G9 | 3.79 | Mn | OP2 A:G9 | 4.77 | Mn | C5' A:G9 | 4.94 | Mn | O5' A:G9 | 4.81 | Mn | C3' B:A8 | 4.84 | Mn | O3' B:A8 | 3.78 | Mn | O3' B:A8 | 4.39 | Mn | C2' B:A8 | 4.70 | Mn | O2' B:A8 | 3.65 | Mn | OP1 B:G9 | 3.68 | Mn | OP1 B:G9 | 2.26 | Mn | P B:G9 | 3.37 | Mn | P B:G9 | 3.70 | Mn | O3' B:G9 | 4.86 | Mn | OP2 B:G9 | 2.48 | Mn | OP2 B:G9 | 4.77 | Mn | C5' B:G9 | 4.22 | Mn | O5' B:G9 | 4.81 | Mn | O5' B:G9 | 4.27 | Mn | OP1 B:G10 | 4.28 |
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Manganese binding site 3 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: A18, B: G19, B: C20, |
conact list:
Atom | Atom | Distance (A) | Mn | C8 B:A18 | 4.40 | Mn | C5 B:A18 | 4.63 | Mn | N6 B:A18 | 4.97 | Mn | N7 B:A18 | 3.90 | Mn | OP2 B:A18 | 4.44 | Mn | C6 B:G19 | 4.99 | Mn | C5 B:G19 | 4.91 | Mn | N7 B:G19 | 4.09 | Mn | OP2 B:G19 | 4.89 | Mn | O6 B:G19 | 4.34 | Mn | C4 B:C20 | 4.97 | Mn | N4 B:C20 | 3.85 |
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Manganese binding site 4 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C20, A: A21, B: 5bu2, B: U3, B: G4, B: C5, A: Mn111, |
conact list:
Atom | Atom | Distance (A) | Mn | N4 A:C20 | 3.85 | Mn | N6 A:A21 | 4.64 | Mn | BR B:5bu2 | 4.62 | Mn | O4 B:5bu2 | 4.95 | Mn | C5 B:U3 | 4.55 | Mn | C4 B:U3 | 4.02 | Mn | O4 B:U3 | 3.04 | Mn | C6 B:G4 | 3.80 | Mn | N1 B:G4 | 4.95 | Mn | C5 B:G4 | 4.45 | Mn | N7 B:G4 | 4.33 | Mn | O6 B:G4 | 2.69 | Mn | N4 B:C5 | 4.89 | Mn | MN A:Mn111 | 4.21 |
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Manganese binding site 5 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: U6, B: G7, |
conact list:
Atom | Atom | Distance (A) | Mn | C5 B:U6 | 4.43 | Mn | C4 B:U6 | 4.24 | Mn | O4 B:U6 | 3.65 | Mn | C6 B:G7 | 4.99 | Mn | C6 B:G7 | 4.17 | Mn | C5 B:G7 | 4.41 | Mn | N7 B:G7 | 4.81 | Mn | N7 B:G7 | 3.89 | Mn | O6 B:G7 | 4.04 | Mn | O6 B:G7 | 3.30 |
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Manganese binding site 6 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: G7, B: A8, B: G9, B: G10, |
conact list:
Atom | Atom | Distance (A) | Mn | C3' B:G7 | 4.80 | Mn | C3' B:G7 | 4.39 | Mn | O3' B:G7 | 4.76 | Mn | O3' B:G7 | 4.28 | Mn | C2' B:G7 | 4.70 | Mn | C2' B:G7 | 4.35 | Mn | OP1 B:A8 | 3.91 | Mn | OP1 B:A8 | 3.80 | Mn | P B:A8 | 3.72 | Mn | P B:A8 | 3.47 | Mn | OP2 B:A8 | 2.60 | Mn | OP2 B:A8 | 2.33 | Mn | C5' B:A8 | 4.85 | Mn | C5' B:A8 | 4.96 | Mn | O5' B:A8 | 4.76 | Mn | O5' B:A8 | 4.71 | Mn | N9 B:G9 | 4.55 | Mn | N9 B:G9 | 4.29 | Mn | C8 B:G9 | 3.42 | Mn | C8 B:G9 | 3.25 | Mn | C6 B:G9 | 3.54 | Mn | C6 B:G9 | 3.34 | Mn | N1 B:G9 | 4.93 | Mn | N1 B:G9 | 4.66 | Mn | C5 B:G9 | 3.23 | Mn | C5 B:G9 | 3.00 | Mn | N7 B:G9 | 2.35 | Mn | N7 B:G9 | 2.22 | Mn | C4 B:G9 | 4.47 | Mn | C4 B:G9 | 4.18 | Mn | OP2 B:G9 | 4.03 | Mn | O5' B:G9 | 4.97 | Mn | O6 B:G9 | 3.18 | Mn | O6 B:G9 | 3.09 | Mn | N7 B:G10 | 4.66 | Mn | O6 B:G10 | 4.49 |
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Manganese binding site 7 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G7, A: A8, A: G9, A: G10, |
conact list:
Atom | Atom | Distance (A) | Mn | C3' A:G7 | 4.57 | Mn | O3' A:G7 | 4.54 | Mn | C2' A:G7 | 4.59 | Mn | OP1 A:A8 | 4.39 | Mn | P A:A8 | 3.79 | Mn | OP2 A:A8 | 2.43 | Mn | O5' A:A8 | 4.90 | Mn | N9 A:G9 | 4.71 | Mn | C8 A:G9 | 3.58 | Mn | C6 A:G9 | 3.75 | Mn | C5 A:G9 | 3.44 | Mn | N7 A:G9 | 2.56 | Mn | C4 A:G9 | 4.65 | Mn | OP2 A:G9 | 4.62 | Mn | O6 A:G9 | 3.38 | Mn | N7 A:G10 | 4.99 |
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Manganese binding site 8 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G12, B: U11, B: G12, B: C13, |
conact list:
Atom | Atom | Distance (A) | Mn | O6 A:G12 | 4.86 | Mn | C5 B:U11 | 4.66 | Mn | C4 B:U11 | 4.31 | Mn | O4 B:U11 | 3.82 | Mn | C6 B:G12 | 4.35 | Mn | C5 B:G12 | 4.62 | Mn | N7 B:G12 | 4.12 | Mn | O6 B:G12 | 3.43 | Mn | N4 B:C13 | 4.46 |
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Manganese binding site 9 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A8, |
conact list:
Atom | Atom | Distance (A) | Mn | N9 A:A8 | 4.58 | Mn | N3 A:A8 | 4.46 | Mn | C8 A:A8 | 4.88 | Mn | C2 A:A8 | 4.71 | Mn | C6 A:A8 | 4.77 | Mn | N1 A:A8 | 4.89 | Mn | C5 A:A8 | 4.45 | Mn | N7 A:A8 | 4.85 | Mn | O4' A:A8 | 4.40 | Mn | C4 A:A8 | 4.28 | Mn | O5' A:A8 | 4.87 |
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Manganese binding site 10 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A22, A: G23, |
conact list:
Atom | Atom | Distance (A) | Mn | C8 A:A22 | 4.49 | Mn | C6 A:A22 | 4.87 | Mn | C5 A:A22 | 4.55 | Mn | N6 A:A22 | 4.32 | Mn | N7 A:A22 | 3.62 | Mn | OP2 A:A22 | 4.51 | Mn | N7 A:G23 | 4.62 | Mn | O6 A:G23 | 4.49 |
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Manganese binding site 11 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A18, A: G19, A: C20, B: Mn104, |
conact list:
Atom | Atom | Distance (A) | Mn | C8 A:A18 | 4.47 | Mn | C5 A:A18 | 4.75 | Mn | N7 A:A18 | 4.00 | Mn | OP2 A:A18 | 4.54 | Mn | C8 A:G19 | 4.76 | Mn | C5 A:G19 | 4.79 | Mn | N7 A:G19 | 3.83 | Mn | O6 A:G19 | 4.43 | Mn | N4 A:C20 | 4.20 | Mn | MN B:Mn104 | 4.21 |
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Manganese binding site 12 out of 12 in 1y90
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Manganese in the PDB 1y90. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: A22, B: G23, |
conact list:
Atom | Atom | Distance (A) | Mn | C8 B:A22 | 4.36 | Mn | C6 B:A22 | 4.53 | Mn | C5 B:A22 | 4.27 | Mn | N6 B:A22 | 3.99 | Mn | N7 B:A22 | 3.44 | Mn | N7 B:G23 | 4.78 | Mn | O6 B:G23 | 4.27 |
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