Manganese in PDB 1xvl: The Three-Dimensional Structure of Mntc From Synechocystis 6803

The structure of The Three-Dimensional Structure of Mntc From Synechocystis 6803, PDB code: 1xvl was solved by V.Rukhman, R.Anati, M.Melamed-Frank, M.Bhattacharyya-Pakrasi, H.B.Pakrasi, N.Adir, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.90
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	128.553, 128.553, 91.050, 90.00, 90.00, 120.00
R / Rfree (%)	23.4 / 28.9

The binding sites of Manganese atom in the The Three-Dimensional Structure of Mntc From Synechocystis 6803 (pdb code 1xvl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the The Three-Dimensional Structure of Mntc From Synechocystis 6803, PDB code: 1xvl:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in the The Three-Dimensional Structure of Mntc From Synechocystis 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Three-Dimensional Structure of Mntc From Synechocystis 6803 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn900 b:39.0 occ:1.00 OE1 A:GLU220 1.6 52.6 1.0 OD2 A:ASP295 1.6 47.8 1.0 NE2 A:HIS154 2.3 40.5 1.0 NE2 A:HIS89 2.3 45.3 1.0 CD A:GLU220 2.4 52.2 1.0 OE2 A:GLU220 2.5 53.0 1.0 CG A:ASP295 2.7 46.1 1.0 CD2 A:HIS89 3.0 47.5 1.0 OD1 A:ASP295 3.1 45.2 1.0 CE1 A:HIS154 3.2 43.9 1.0 CD2 A:HIS154 3.3 43.5 1.0 CE1 A:HIS89 3.4 45.1 1.0 CG A:GLU220 3.9 52.4 1.0 ND2 A:ASN241 3.9 51.1 1.0 CB A:ASP295 4.0 48.3 1.0 CG A:HIS89 4.2 47.1 1.0 CG A:ASN241 4.3 50.3 1.0 ND1 A:HIS154 4.3 43.3 1.0 CB A:ALA222 4.3 49.3 1.0 ND1 A:HIS89 4.4 45.8 1.0 CG A:HIS154 4.4 43.6 1.0 OD1 A:ASN241 4.5 49.2 1.0 CB A:GLU220 4.6 52.2 1.0

Manganese binding site 2 out of 3 in the The Three-Dimensional Structure of Mntc From Synechocystis 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Three-Dimensional Structure of Mntc From Synechocystis 6803 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn900 b:48.5 occ:1.00 OD2 B:ASP295 1.6 38.2 1.0 OE2 B:GLU220 1.6 61.1 1.0 NE2 B:HIS89 2.2 44.4 1.0 NE2 B:HIS154 2.2 41.2 1.0 CG B:ASP295 2.5 46.4 1.0 CD B:GLU220 2.7 59.6 1.0 OD1 B:ASP295 2.7 45.1 1.0 OE1 B:GLU220 3.0 56.9 1.0 CE1 B:HIS89 3.0 48.5 1.0 CD2 B:HIS154 3.1 41.6 1.0 CD2 B:HIS89 3.2 41.7 1.0 CE1 B:HIS154 3.2 44.1 1.0 CB B:ASP295 3.9 48.4 1.0 OD1 B:ASN241 3.9 71.5 1.0 CG B:GLU220 4.1 60.4 1.0 ND1 B:HIS89 4.2 48.7 1.0 CG B:ASN241 4.2 73.5 1.0 CG B:HIS154 4.3 42.2 1.0 CG B:HIS89 4.3 46.9 1.0 ND1 B:HIS154 4.3 43.8 1.0 ND2 B:ASN241 4.4 71.0 1.0 CB B:ALA222 4.4 47.2 1.0 CB B:GLU220 4.6 58.1 1.0 CB B:ASN241 4.9 74.6 1.0

Manganese binding site 3 out of 3 in the The Three-Dimensional Structure of Mntc From Synechocystis 6803


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of The Three-Dimensional Structure of Mntc From Synechocystis 6803 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn900 b:69.0 occ:1.00 OD2 C:ASP295 1.9 72.1 1.0 NE2 C:HIS89 2.0 45.3 1.0 OE1 C:GLU220 2.0 84.2 1.0 OD1 C:ASP295 2.5 69.2 1.0 CG C:ASP295 2.5 70.5 1.0 NE2 C:HIS154 2.6 81.9 1.0 CD C:GLU220 2.7 88.6 1.0 OE2 C:GLU220 2.7 84.8 1.0 CD2 C:HIS89 2.8 47.6 1.0 CE1 C:HIS89 3.1 46.6 1.0 CD2 C:HIS154 3.2 81.6 1.0 CE1 C:HIS154 3.7 81.6 1.0 CB C:ASP295 3.9 67.4 1.0 CG C:HIS89 4.0 50.9 1.0 ND1 C:HIS89 4.1 47.5 1.0 CG C:GLU220 4.2 90.4 1.0 ND2 C:ASN241 4.3 89.5 1.0 OD1 C:ASN241 4.5 88.2 1.0 CG C:ASN241 4.5 89.5 1.0 CG C:HIS154 4.5 81.6 1.0 CB C:ALA222 4.7 94.6 1.0 ND1 C:HIS154 4.7 81.8 1.0 CD1 C:LEU114 4.9 67.2 1.0 CA C:ASP295 4.9 66.5 1.0

V.Rukhman, R.Anati, M.Melamed-Frank, N.Adir. The Mntc Crystal Structure Suggests That Import of MN2+ in Cyanobacteria Is Redox Controlled. J.Mol.Biol. V. 348 961 2005.
ISSN: ISSN 0022-2836
PubMed: 15843026
DOI: 10.1016/J.JMB.2005.03.006