Atomistry » Manganese » PDB 1xif-1ytm » 1xuq
Atomistry »
  Manganese »
    PDB 1xif-1ytm »
      1xuq »

Manganese in PDB 1xuq: Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution.

Enzymatic activity of Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution.

All present enzymatic activity of Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution.:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution., PDB code: 1xuq was solved by I.W.Boucher, V.M.Levdikov, E.V.Blagova, M.J.Fogg, J.A.Brannigan, A.J.Wilkinson, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.45 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.881, 60.439, 61.981, 90.00, 106.30, 90.00
R / Rfree (%) 16.9 / 22.8

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution. (pdb code 1xuq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution., PDB code: 1xuq:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1xuq

Go back to Manganese Binding Sites List in 1xuq
Manganese binding site 1 out of 2 in the Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn204

b:14.9
occ:1.00
OD2 A:ASP165 1.9 18.2 1.0
NE2 A:HIS28 2.0 10.9 1.0
NE2 A:HIS169 2.1 16.5 1.0
NE2 A:HIS83 2.1 19.3 1.0
O A:HOH206 2.2 16.7 1.0
O A:HOH365 2.2 39.7 1.0
CE1 A:HIS28 3.0 16.9 1.0
CE1 A:HIS83 3.0 18.7 1.0
CG A:ASP165 3.0 15.6 1.0
CD2 A:HIS28 3.1 17.6 1.0
CE1 A:HIS169 3.1 19.4 1.0
CD2 A:HIS169 3.1 16.3 1.0
CD2 A:HIS83 3.2 17.5 1.0
OD1 A:ASP165 3.5 17.5 1.0
ND1 A:HIS28 4.1 16.9 1.0
CG A:HIS28 4.2 13.8 1.0
ND1 A:HIS83 4.2 18.5 1.0
ND1 A:HIS169 4.2 20.4 1.0
CG A:HIS169 4.2 18.3 1.0
CG A:HIS83 4.3 19.9 1.0
CB A:ASP165 4.3 17.5 1.0
NE2 A:GLN150 4.6 19.3 1.0
CB A:TRP167 4.7 17.8 1.0
CZ2 A:TRP132 4.7 20.0 1.0
CG A:TRP167 4.8 18.6 1.0
CB A:ALA170 4.9 18.7 1.0

Manganese binding site 2 out of 2 in 1xuq

Go back to Manganese Binding Sites List in 1xuq
Manganese binding site 2 out of 2 in the Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Soda-1 (BA4499) From Bacillus Anthracis at 1.8A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn204

b:18.1
occ:1.00
OD2 B:ASP165 1.9 22.6 1.0
NE2 B:HIS28 2.0 14.2 1.0
NE2 B:HIS83 2.0 28.8 1.0
O B:HOH206 2.1 17.5 1.0
NE2 B:HIS169 2.1 25.2 1.0
CE1 B:HIS83 3.0 22.1 1.0
CE1 B:HIS28 3.0 20.7 1.0
CE1 B:HIS169 3.0 21.9 1.0
CD2 B:HIS28 3.0 19.1 1.0
CG B:ASP165 3.1 18.0 1.0
CD2 B:HIS83 3.1 29.5 1.0
CD2 B:HIS169 3.1 18.4 1.0
OD1 B:ASP165 3.6 18.9 1.0
ND1 B:HIS28 4.1 16.9 1.0
ND1 B:HIS83 4.1 21.7 1.0
ND1 B:HIS169 4.2 22.0 1.0
CG B:HIS28 4.2 19.1 1.0
CG B:HIS83 4.2 29.9 1.0
CG B:HIS169 4.2 22.0 1.0
CB B:ASP165 4.3 20.7 1.0
CZ2 B:TRP132 4.6 28.4 1.0
NE2 B:GLN150 4.7 25.3 1.0
CB B:TRP167 4.8 18.1 1.0
CG B:TRP167 4.9 18.4 1.0
CB B:ALA170 5.0 20.1 1.0

Reference:

I.W.Boucher, A.K.Kalliomaa, V.M.Levdikov, E.V.Blagova, M.J.Fogg, J.A.Brannigan, K.S.Wilson, A.J.Wilkinson. Structures of Two Superoxide Dismutases From Bacillus Anthracis Reveal A Novel Active Centre. Acta Crystallogr.,Sect.F V. 61 621 2005.
ISSN: ESSN 1744-3091
PubMed: 16511113
DOI: 10.1107/S1744309105017380
Page generated: Sat Oct 5 13:09:16 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy