Chemical elements
  Manganese
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    PDB 117e-1cs0
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    PDB 1fe1-1gz9
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    PDB 1j54-1kx3
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    PDB 1pj3-1r8b
    PDB 1r8c-1tc2
    PDB 1tei-1vby
    PDB 1vew-1xid
    PDB 1xie-1za0
      1xie
      1xif
      1xig
      1xih
      1xii
      1xij
      1xil
      1xis
      1xld
      1xle
      1xlf
      1xli
      1xlj
      1xlk
      1xmf
      1xms
      1xnz
      1xqn
      1xre
      1xuq
      1xuu
      1xuz
      1xvl
      1xzw
      1y3o
      1y63
      1y90
      1ybu
      1yd0
      1yd2
      1yd3
      1yd4
      1yd5
      1ylh
      1yn2
      1yny
      1ypp
      1yqn
      1yro
      1yst
      1ytm
      1yw7
      1yw8
      1yw9
      1yyd
      1z25
      1z2w
      1z9j
      1z9k
      1za0
    PDB 1zao-2ah9
    PDB 2akw-2brl
    PDB 2bvl-2dvb
    PDB 2dvd-2g38
    PDB 2g4i-2ify
    PDB 2iie-2mnr
    PDB 2muc-2p9a
    PDB 2pal-2r21
    PDB 2r22-2vqr
    PDB 2vs3-2z87
    PDB 2zad-3bso
    PDB 3bu0-3e7b
    PDB 3e8q-3g82
    PDB 3gbc-3ilm
    PDB 3ioi-3lp0
    PDB 3lp1-3n25
    PDB 3n37-3pvb
    PDB 3py5-3tmy
    PDB 3twz-4e5f
    PDB 4e5g-8icv
    PDB 8icw-9xim

Manganese in the structure of Modes of Binding Substrates and Their Analogues to the Enzyme D-Xylose Isomerase (pdb 1xie)






The binding sites of Manganese atom in the structure of Modes of Binding Substrates and Their Analogues to the Enzyme D-Xylose Isomerase (pdb code 1xie). This binding sites where shown with 5.0 Angstroms radius around Manganese atom.
The 1xie structure was solved by H.L.CARRELL, J.P.GLUSKER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-1.7
Space groupI222
a (A)93.500
b (A)99.560
c (A)102.800
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)n/a
Rfree (%)n/a


Manganese Binding Sites:

Manganese binding site 1 out of 2 in 1xie


Manganese binding site 1 out of 2 in 1xie
Click to enlarge
stereopicture of Manganese binding site 1 out of 2 in 1xie
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1xie. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu217, A: His220, A: Asn247, A: Asp255, A: Asp257, A: Asp287, A: Aso389, A: Mn391, A: Hoh409, A: Hoh412, A: Hoh565, A: Hoh615,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu2173.11
MnOE2 A:Glu2172.13
MnCD A:Glu2173.00
MnCG A:Glu2174.41
MnNE2 A:His2202.28
MnND1 A:His2204.27
MnCD2 A:His2203.00
MnCE1 A:His2203.33
MnCG A:His2204.14
MnND2 A:Asn2473.94
MnCB A:Asp2554.14
MnOD2 A:Asp2552.28
MnOD1 A:Asp2552.43
MnCG A:Asp2552.62
MnN A:Asp2574.90
MnCB A:Asp2574.53
MnOD2 A:Asp2573.31
MnOD1 A:Asp2572.17
MnCG A:Asp2573.10
MnCA A:Asp2574.88
MnOD2 A:Asp2874.52
MnO3 A:Aso3894.23
MnMN A:Mn3914.73
MnO A:Hoh4092.29
MnO A:Hoh4124.00
MnO A:Hoh5653.84
MnO A:Hoh6154.64

interactive model:


Manganese binding site 2 out of 2 in 1xie


Manganese binding site 2 out of 2 in 1xie
Click to enlarge
stereopicture of Manganese binding site 2 out of 2 in 1xie
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Manganese in the PDB 1xie. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu181, A: Glu217, A: His220, A: Asp245, A: Asp287, A: Aso389, A: Mn390, A: Hoh408, A: Hoh409,

conact list:


AtomAtomDistance (A)
MnOE1 A:Glu1813.28
MnOE2 A:Glu1812.12
MnCD A:Glu1813.00
MnCG A:Glu1814.35
MnOE1 A:Glu2172.16
MnCB A:Glu2174.16
MnOE2 A:Glu2174.28
MnCD A:Glu2173.31
MnCG A:Glu2174.03
MnNE2 A:His2204.67
MnND1 A:His2204.71
MnCE1 A:His2204.04
MnCB A:Asp2453.94
MnOD2 A:Asp2452.19
MnOD1 A:Asp2454.31
MnCG A:Asp2453.36
MnCB A:Asp2873.65
MnOD2 A:Asp2872.26
MnOD1 A:Asp2874.30
MnCG A:Asp2873.24
MnC5 A:Aso3894.54
MnC4 A:Aso3893.16
MnC3 A:Aso3893.14
MnO3 A:Aso3892.47
MnO4 A:Aso3892.35
MnC2 A:Aso3894.61
MnMN A:Mn3904.73
MnO A:Hoh4083.99
MnO A:Hoh4093.83

interactive model:




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