Atomistry » Manganese » PDB 1w2c-1xie » 1x83
Atomistry »
  Manganese »
    PDB 1w2c-1xie »
      1x83 »

Manganese in PDB 1x83: Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp

Enzymatic activity of Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp

All present enzymatic activity of Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp:
5.3.3.2;

Protein crystallography data

The structure of Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp, PDB code: 1x83 was solved by J.Wouters, E.Oldfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.090, 71.880, 91.730, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 27.1

Other elements in 1x83:

The structure of Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp (pdb code 1x83). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp, PDB code: 1x83:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1x83

Go back to Manganese Binding Sites List in 1x83
Manganese binding site 1 out of 2 in the Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:17.2
occ:1.00
NE2 A:HIS69 2.1 19.1 1.0
NE2 A:HIS25 2.1 24.0 1.0
OE2 A:GLU116 2.1 23.0 1.0
NE2 A:HIS32 2.1 17.5 1.0
OE1 A:GLU114 2.2 20.2 1.0
OE2 A:GLU114 2.2 27.9 1.0
CD A:GLU114 2.5 23.8 1.0
CE1 A:HIS32 2.9 24.0 1.0
CD2 A:HIS25 3.0 26.5 1.0
CD2 A:HIS69 3.0 20.2 1.0
CE1 A:HIS69 3.1 17.1 1.0
CE1 A:HIS25 3.2 19.5 1.0
CD A:GLU116 3.2 29.7 1.0
CD2 A:HIS32 3.3 22.5 1.0
CG A:GLU116 3.8 28.9 1.0
CG A:GLU114 4.0 18.4 1.0
O A:HOH591 4.1 27.6 1.0
ND1 A:HIS32 4.1 21.4 1.0
CG A:HIS25 4.2 19.4 1.0
CG A:HIS69 4.2 19.8 1.0
ND1 A:HIS69 4.2 18.1 1.0
ND1 A:HIS25 4.2 22.5 1.0
OE1 A:GLU116 4.2 21.9 1.0
CG A:HIS32 4.3 21.6 1.0
C1 A:SBH301 4.5 23.1 1.0
CG1 A:VAL6 4.8 22.5 1.0
CB A:GLU114 4.9 20.3 1.0

Manganese binding site 2 out of 2 in 1x83

Go back to Manganese Binding Sites List in 1x83
Manganese binding site 2 out of 2 in the Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Y104F Ipp Isomerase Reacted with (S)-Bromohydrine of Ipp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn201

b:23.2
occ:1.00
NE2 B:HIS69 2.0 25.3 1.0
NE2 B:HIS25 2.0 26.8 1.0
NE2 B:HIS32 2.1 26.6 1.0
OE1 B:GLU114 2.2 21.7 1.0
OE2 B:GLU114 2.3 32.7 1.0
OE2 B:GLU116 2.4 28.1 1.0
CD B:GLU114 2.6 18.7 1.0
CE1 B:HIS69 2.9 28.4 1.0
CD2 B:HIS25 2.9 24.2 1.0
CE1 B:HIS25 3.0 27.0 1.0
CD2 B:HIS69 3.0 25.8 1.0
CE1 B:HIS32 3.0 27.8 1.0
CD2 B:HIS32 3.2 28.3 1.0
CD B:GLU116 3.4 28.4 1.0
CG B:GLU116 3.8 28.5 1.0
ND1 B:HIS69 4.0 28.4 1.0
CG B:HIS25 4.1 23.7 1.0
ND1 B:HIS25 4.1 27.5 1.0
CG B:HIS69 4.1 21.4 1.0
CG B:GLU114 4.1 25.2 1.0
ND1 B:HIS32 4.2 30.8 1.0
CG B:HIS32 4.3 32.1 1.0
OE1 B:GLU116 4.4 35.2 1.0
CG1 B:VAL6 4.8 23.6 1.0
C1 B:SBH301 4.9 66.0 0.0
CB B:GLU114 5.0 17.9 1.0
C2 B:SBH301 5.0 65.6 0.0

Reference:

J.Wouters, F.Yin, Y.Song, Y.Zhang, Y.Oudjama, V.Stalon, L.Droogmans, C.T.Morita, E.Oldfield. A Crystallographic Investigation of Phosphoantigen Binding to Isopentenyl Pyrophosphate/Dimethylallyl Pyrophosphate Isomerase J.Am.Chem.Soc. V. 127 536 2005.
ISSN: ISSN 0002-7863
PubMed: 15643873
DOI: 10.1021/JA040207I
Page generated: Tue Dec 15 03:57:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy