Manganese in PDB 1wuv: Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin

The structure of Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin, PDB code: 1wuv was solved by B.T.Freitas, P.Delatorre, F.B.M.B.Moreno, B.A.M.Rocha, E.P.Souza, F.Canduri, A.L.H.Cardoso, A.H.Sampaio, W.F.Azevedo Jr., B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	100.903, 115.351, 241.078, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 23.3

The structure of Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Manganese atom in the Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin (pdb code 1wuv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin, PDB code: 1wuv:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn239 b:13.1 occ:1.00 NE2 A:HIS24 2.1 8.5 1.0 OD2 A:ASP10 2.1 11.1 1.0 O A:HOH296 2.2 14.0 1.0 OE2 A:GLU8 2.2 13.3 1.0 OD1 A:ASP19 2.3 12.6 1.0 O A:HOH335 2.3 12.2 1.0 CG A:ASP19 3.1 14.0 1.0 CE1 A:HIS24 3.1 7.9 1.0 CD2 A:HIS24 3.1 9.6 1.0 CG A:ASP10 3.2 14.3 1.0 CD A:GLU8 3.2 10.0 1.0 OD2 A:ASP19 3.4 11.8 1.0 OE1 A:GLU8 3.6 11.7 1.0 CB A:ASP10 3.6 11.1 1.0 O A:HOH304 3.9 4.5 1.0 OG A:SER34 4.1 11.8 1.0 CB A:ASP19 4.2 16.5 1.0 CA A:CA240 4.2 11.0 1.0 ND1 A:HIS24 4.2 8.6 1.0 CG A:HIS24 4.3 10.0 1.0 OD1 A:ASP10 4.3 12.2 1.0 O A:VAL32 4.4 10.7 1.0 CA A:ASP19 4.5 17.2 1.0 CG A:GLU8 4.5 10.5 1.0

Manganese binding site 2 out of 4 in the Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn239 b:13.7 occ:1.00 NE2 D:HIS24 2.1 9.0 1.0 OE2 D:GLU8 2.1 13.8 1.0 OD2 D:ASP10 2.1 10.1 1.0 O D:HOH341 2.2 7.2 1.0 O D:HOH245 2.2 15.0 1.0 OD1 D:ASP19 2.3 16.1 1.0 CE1 D:HIS24 3.1 6.6 1.0 CG D:ASP10 3.1 12.2 1.0 CD2 D:HIS24 3.1 9.8 1.0 CD D:GLU8 3.2 12.4 1.0 CG D:ASP19 3.2 14.2 1.0 OD2 D:ASP19 3.5 16.0 1.0 CB D:ASP10 3.5 11.7 1.0 OE1 D:GLU8 3.5 12.1 1.0 O D:HOH313 3.9 9.1 1.0 OG D:SER34 4.1 13.7 1.0 CA D:CA240 4.2 11.8 1.0 ND1 D:HIS24 4.2 9.5 1.0 OD1 D:ASP10 4.2 9.6 1.0 O D:HOH288 4.2 24.0 1.0 CG D:HIS24 4.3 10.1 1.0 CB D:ASP19 4.4 16.1 1.0 O D:VAL32 4.4 13.5 1.0 CG D:GLU8 4.5 11.8 1.0 CA D:ASP19 4.6 16.7 1.0

Manganese binding site 3 out of 4 in the Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin within 5.0Å range: probe atom residue distance (Å) B Occ G:Mn239 b:18.0 occ:1.00 OD2 G:ASP10 2.0 13.1 1.0 O G:HOH249 2.2 14.3 1.0 OE2 G:GLU8 2.2 19.6 1.0 OD1 G:ASP19 2.3 20.3 1.0 NE2 G:HIS24 2.3 12.1 1.0 O G:HOH333 2.4 15.9 1.0 CG G:ASP10 3.1 14.5 1.0 CG G:ASP19 3.2 20.5 1.0 CD G:GLU8 3.2 17.0 1.0 CE1 G:HIS24 3.3 6.9 1.0 CD2 G:HIS24 3.3 11.4 1.0 OE1 G:GLU8 3.4 16.7 1.0 OD2 G:ASP19 3.5 19.3 1.0 CB G:ASP10 3.6 15.3 1.0 OG G:SER34 4.0 20.7 1.0 O G:HOH294 4.0 21.8 1.0 OD1 G:ASP10 4.1 12.1 1.0 CA G:CA240 4.2 17.9 1.0 O G:HOH277 4.3 24.1 1.0 O G:VAL32 4.3 22.7 1.0 CB G:ASP19 4.3 20.4 1.0 ND1 G:HIS24 4.4 9.6 1.0 CG G:HIS24 4.5 11.6 1.0 CG G:GLU8 4.5 14.6 1.0 CA G:ASP19 4.6 21.3 1.0 CD G:PRO20 4.8 21.2 1.0

Manganese binding site 4 out of 4 in the Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin within 5.0Å range: probe atom residue distance (Å) B Occ J:Mn239 b:17.9 occ:1.00 O J:HOH323 2.1 19.6 1.0 OD2 J:ASP10 2.1 8.3 1.0 OE2 J:GLU8 2.1 15.3 1.0 NE2 J:HIS24 2.2 16.2 1.0 OD1 J:ASP19 2.3 12.8 1.0 O J:HOH336 2.3 14.1 1.0 CE1 J:HIS24 3.1 14.5 1.0 CD J:GLU8 3.1 18.0 1.0 CG J:ASP10 3.1 13.7 1.0 CG J:ASP19 3.1 15.6 1.0 CD2 J:HIS24 3.2 15.9 1.0 OD2 J:ASP19 3.4 14.2 1.0 OE1 J:GLU8 3.5 14.8 1.0 CB J:ASP10 3.6 12.6 1.0 O J:HOH293 4.0 20.6 1.0 OG J:SER34 4.1 15.9 1.0 CA J:CA240 4.2 18.3 1.0 ND1 J:HIS24 4.2 12.6 1.0 OD1 J:ASP10 4.2 15.2 1.0 CG J:HIS24 4.3 14.3 1.0 CB J:ASP19 4.3 17.9 1.0 O J:VAL32 4.3 16.4 1.0 CG J:GLU8 4.5 15.1 1.0 CA J:ASP19 4.6 18.8 1.0

P.Delatorre, B.A.M.Rocha, E.P.Souza, T.M.Oliveira, G.A.Bezerra, F.B.M.B.Moreno, B.T.Freitas, T.Santi-Gadelha, A.H.Sampaio, W.F.Azevedo Jr., B.S.Cavada. Structure of A Lectin From Canavalia Gladiata Seeds: New Structural Insights For Old Molecules Bmc Struct.Biol. V. 7 52 2007.
ISSN: ESSN 1472-6807
PubMed: 17683532
DOI: 10.1186/1472-6807-7-52