Manganese in PDB 1wrn: Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis

The structure of Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis, PDB code: 1wrn was solved by T.Kumarevel, H.Mizuno, P.K.R.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.66 / 2.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.760, 81.400, 76.040, 90.00, 90.00, 90.00
R / Rfree (%)	25.4 / 30.5

The binding sites of Manganese atom in the Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis (pdb code 1wrn). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis, PDB code: 1wrn:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in the Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn4002 b:31.8 occ:1.00 O A:HOH4084 2.1 22.3 1.0 NE2 A:HIS73 2.2 27.5 1.0 O B:HIS2001 2.3 38.0 1.0 NE2 B:HIS138 2.3 49.6 1.0 N B:HIS2001 2.3 40.5 0.0 NE2 A:HIS77 2.3 27.3 1.0 CD2 A:HIS73 2.8 24.4 1.0 C B:HIS2001 3.0 39.5 1.0 CA B:HIS2001 3.1 40.3 1.0 CE1 A:HIS77 3.2 30.4 1.0 CD2 B:HIS138 3.2 49.3 1.0 CE1 B:HIS138 3.3 48.4 1.0 CD2 A:HIS77 3.3 27.9 1.0 CE1 A:HIS73 3.3 25.6 1.0 CG A:HIS73 4.1 29.4 1.0 NH1 B:ARG88 4.2 26.8 1.0 OXT B:HIS2001 4.2 37.1 1.0 ND1 A:HIS73 4.3 26.9 1.0 ND1 A:HIS77 4.4 27.7 1.0 ND1 B:HIS138 4.4 47.7 1.0 CG B:HIS138 4.4 49.1 1.0 CB B:HIS2001 4.4 42.1 1.0 CG A:HIS77 4.4 29.2 1.0 OH A:TYR69 4.5 46.6 1.0

Manganese binding site 2 out of 3 in the Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn4003 b:42.7 occ:1.00 N C:HIS3001 2.0 49.4 0.0 O B:HOH4046 2.1 18.2 1.0 O C:HIS3001 2.2 45.5 1.0 NE2 C:HIS138 2.4 81.1 1.0 NE2 B:HIS73 2.5 36.9 1.0 CA C:HIS3001 2.6 47.8 1.0 NE2 B:HIS77 2.6 55.5 1.0 C C:HIS3001 2.7 47.4 1.0 CD2 B:HIS73 3.0 37.1 1.0 CE1 B:HIS77 3.3 55.6 1.0 CE1 C:HIS138 3.3 81.9 1.0 CD2 C:HIS138 3.4 81.4 1.0 CE1 B:HIS73 3.6 37.9 1.0 CD2 B:HIS77 3.8 54.2 1.0 OXT C:HIS3001 4.0 48.5 1.0 CB C:HIS3001 4.1 52.6 1.0 CG B:HIS73 4.3 43.0 1.0 OH B:TYR69 4.4 81.9 1.0 ND1 C:HIS138 4.4 82.1 1.0 CG C:HIS138 4.5 80.9 1.0 NH1 C:ARG88 4.5 43.0 1.0 ND1 B:HIS77 4.6 56.1 1.0 ND1 B:HIS73 4.6 40.2 1.0 ND1 C:HIS3001 4.8 58.4 1.0 CG B:HIS77 4.8 55.1 1.0 CG C:HIS3001 4.9 56.1 1.0

Manganese binding site 3 out of 3 in the Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Metal Ion Dependency of the Antiterminator Protein, Hutp, For Binding to the Terminator Region of Hut Mrna- A Structural Basis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn4001 b:25.3 occ:1.00 NE2 A:HIS138 2.2 23.4 1.0 NE2 C:HIS77 2.2 25.6 1.0 O C:HOH4046 2.2 21.2 1.0 N A:HIS1001 2.3 36.5 0.0 O A:HIS1001 2.3 38.0 1.0 NE2 C:HIS73 2.3 25.2 1.0 CD2 A:HIS138 3.0 24.9 1.0 C A:HIS1001 3.0 37.4 1.0 CD2 C:HIS73 3.1 28.6 1.0 CA A:HIS1001 3.1 36.0 1.0 CE1 C:HIS77 3.1 29.6 1.0 CE1 A:HIS138 3.3 24.9 1.0 CD2 C:HIS77 3.3 28.7 1.0 CE1 C:HIS73 3.4 32.5 1.0 NH1 A:ARG88 4.2 33.9 1.0 CG A:HIS138 4.2 26.5 1.0 ND1 C:HIS77 4.2 30.2 1.0 OXT A:HIS1001 4.3 38.0 1.0 CG C:HIS73 4.3 32.0 1.0 ND1 A:HIS138 4.3 22.9 1.0 ND1 C:HIS73 4.4 31.4 1.0 CG C:HIS77 4.4 28.2 1.0 CB A:HIS1001 4.5 37.5 1.0 OH C:TYR69 4.8 41.3 1.0

T.Kumarevel, H.Mizuno, P.K.R.Kumar. Characterization of the Metal Ion Binding Site in the Anti-Terminator Protein, Hutp, of Bacillus Subtilis Nucleic Acids Res. V. 33 5494 2005.
ISSN: ISSN 0305-1048
PubMed: 16192572
DOI: 10.1093/NAR/GKI868